Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 NCF1B-203ENST00000435988 1254 ntBASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC40Q4G0X9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 GUSBP6-202ENST00000438529 1198 ntBASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 TSPY6P-201ENST00000448518 926 ntBASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 AC092666.2-201ENST00000613287 246 ntBASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC40Q4G0X9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC091874.3-201ENST00000512672 1195 ntBASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC40Q4G0X9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC40Q4G0X9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 AC018553.1-201ENST00000616682 1458 ntBASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 AC005829.2-201ENST00000571422 1056 ntBASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 MIR4758-201ENST00000577688 71 ntBASIC21.58■■□□□ 1.05
CCDC40Q4G0X9 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms