Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.99■□□□□ 0.95
CHD9Q3L8U1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 HLA-G-202ENST00000376815 851 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 HLA-G-203ENST00000376818 1127 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 AC092119.3-201ENST00000612618 583 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 MIR3180-1-201ENST00000580374 94 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 MIR3180-3-201ENST00000584616 94 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 AL671883.3-201ENST00000603274 991 ntBASIC20.98■□□□□ 0.95
CHD9Q3L8U1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.98■□□□□ 0.95
CHD9Q3L8U1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CHD9Q3L8U1 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 AC116351.2-201ENST00000606540 1585 ntBASIC20.96■□□□□ 0.95
CHD9Q3L8U1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 AL023973.1-201ENST00000624619 620 ntBASIC20.96■□□□□ 0.95
CHD9Q3L8U1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHD9Q3L8U1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
CHD9Q3L8U1 AL845331.1-201ENST00000424978 1190 ntBASIC20.95■□□□□ 0.94
CHD9Q3L8U1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 CKBP1-201ENST00000565489 1086 ntBASIC20.95■□□□□ 0.94
CHD9Q3L8U1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 AC131212.4-201ENST00000623606 975 ntBASIC20.95■□□□□ 0.94
CHD9Q3L8U1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms