Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VARSP26640 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.29■□□□□ 0.68
VARSP26640 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.29■□□□□ 0.68
VARSP26640 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.29■□□□□ 0.68
VARSP26640 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VARSP26640 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.29■□□□□ 0.68
VARSP26640 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.29■□□□□ 0.68
VARSP26640 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VARSP26640 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VARSP26640 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.29■□□□□ 0.68
VARSP26640 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
VARSP26640 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.28■□□□□ 0.68
VARSP26640 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VARSP26640 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.28■□□□□ 0.68
VARSP26640 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VARSP26640 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
VARSP26640 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.28■□□□□ 0.68
VARSP26640 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.28■□□□□ 0.68
VARSP26640 AC091874.3-201ENST00000512672 1195 ntBASIC19.28■□□□□ 0.68
VARSP26640 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.28■□□□□ 0.68
VARSP26640 AL031963.3-201ENST00000606441 850 ntBASIC19.28■□□□□ 0.68
VARSP26640 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.28■□□□□ 0.68
VARSP26640 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VARSP26640 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.27■□□□□ 0.68
VARSP26640 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.27■□□□□ 0.68
VARSP26640 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.27■□□□□ 0.68
VARSP26640 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.27■□□□□ 0.68
VARSP26640 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
VARSP26640 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.27■□□□□ 0.68
VARSP26640 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VARSP26640 AC018445.3-201ENST00000624177 1945 ntBASIC19.27■□□□□ 0.67
VARSP26640 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
VARSP26640 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.27■□□□□ 0.67
VARSP26640 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.26■□□□□ 0.67
VARSP26640 KRT8P20-201ENST00000423953 1409 ntBASIC19.26■□□□□ 0.67
VARSP26640 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VARSP26640 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.26■□□□□ 0.67
VARSP26640 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 ESRRAP1-201ENST00000400596 1257 ntBASIC19.26■□□□□ 0.67
VARSP26640 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.26■□□□□ 0.67
VARSP26640 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.26■□□□□ 0.67
VARSP26640 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VARSP26640 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VARSP26640 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms