Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NKX2-2O95096 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-2O95096 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
NKX2-2O95096 AC026366.1-201ENST00000488803 879 ntBASIC18.18■□□□□ 0.5
NKX2-2O95096 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.18■□□□□ 0.5
NKX2-2O95096 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.18■□□□□ 0.5
NKX2-2O95096 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-2O95096 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-2O95096 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-2O95096 AP006587.1-201ENST00000534129 1502 ntBASIC18.18■□□□□ 0.5
NKX2-2O95096 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-2O95096 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-2O95096 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-2O95096 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX2-2O95096 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
NKX2-2O95096 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
NKX2-2O95096 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.17■□□□□ 0.5
NKX2-2O95096 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.17■□□□□ 0.5
NKX2-2O95096 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.17■□□□□ 0.5
NKX2-2O95096 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
NKX2-2O95096 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NKX2-2O95096 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-2O95096 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NKX2-2O95096 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.16■□□□□ 0.5
NKX2-2O95096 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NKX2-2O95096 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.16■□□□□ 0.5
NKX2-2O95096 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 YBX1P10-201ENST00000444752 975 ntBASIC18.16■□□□□ 0.5
NKX2-2O95096 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.16■□□□□ 0.5
NKX2-2O95096 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.16■□□□□ 0.5
NKX2-2O95096 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.16■□□□□ 0.5
NKX2-2O95096 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.16■□□□□ 0.5
NKX2-2O95096 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NKX2-2O95096 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.15■□□□□ 0.5
NKX2-2O95096 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.15■□□□□ 0.5
NKX2-2O95096 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.15■□□□□ 0.5
NKX2-2O95096 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.15■□□□□ 0.5
NKX2-2O95096 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.15■□□□□ 0.5
NKX2-2O95096 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NKX2-2O95096 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.15■□□□□ 0.5
NKX2-2O95096 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.15■□□□□ 0.5
NKX2-2O95096 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms