Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.27■□□□□ 0.36
LMX1BO60663 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.27■□□□□ 0.36
LMX1BO60663 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 AL355472.2-201ENST00000422958 438 ntBASIC17.27■□□□□ 0.36
LMX1BO60663 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.27■□□□□ 0.36
LMX1BO60663 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.27■□□□□ 0.36
LMX1BO60663 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.27■□□□□ 0.36
LMX1BO60663 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.27■□□□□ 0.36
LMX1BO60663 AC026366.1-201ENST00000488803 879 ntBASIC17.27■□□□□ 0.36
LMX1BO60663 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1BO60663 AL020996.1-203ENST00000536896 2307 ntBASIC17.27■□□□□ 0.35
LMX1BO60663 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1BO60663 AC018445.3-201ENST00000624177 1945 ntBASIC17.27■□□□□ 0.35
LMX1BO60663 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.27■□□□□ 0.35
LMX1BO60663 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.27■□□□□ 0.35
LMX1BO60663 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
LMX1BO60663 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 MCRIP2P1-201ENST00000394346 511 ntBASIC17.26■□□□□ 0.35
LMX1BO60663 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.26■□□□□ 0.35
LMX1BO60663 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.26■□□□□ 0.35
LMX1BO60663 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.26■□□□□ 0.35
LMX1BO60663 UNC93B4-201ENST00000505679 747 ntBASIC17.26■□□□□ 0.35
LMX1BO60663 UNC93B5-201ENST00000530315 699 ntBASIC17.26■□□□□ 0.35
LMX1BO60663 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 KRT8P17-201ENST00000453110 1448 ntBASIC17.26■□□□□ 0.35
LMX1BO60663 AP000974.1-201ENST00000623909 2387 ntBASIC17.26■□□□□ 0.35
LMX1BO60663 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1BO60663 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1BO60663 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LMX1BO60663 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 AL596275.1-201ENST00000423464 877 ntBASIC17.25■□□□□ 0.35
LMX1BO60663 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.25■□□□□ 0.35
LMX1BO60663 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LMX1BO60663 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.25■□□□□ 0.35
LMX1BO60663 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.25■□□□□ 0.35
LMX1BO60663 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
LMX1BO60663 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LMX1BO60663 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.25■□□□□ 0.35
LMX1BO60663 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
LMX1BO60663 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LMX1BO60663 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1BO60663 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LMX1BO60663 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms