Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX4O14627 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.06■□□□□ 0.64
CDX4O14627 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX4O14627 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CDX4O14627 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX4O14627 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX4O14627 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.05■□□□□ 0.64
CDX4O14627 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.05■□□□□ 0.64
CDX4O14627 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.05■□□□□ 0.64
CDX4O14627 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.05■□□□□ 0.64
CDX4O14627 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.05■□□□□ 0.64
CDX4O14627 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.05■□□□□ 0.64
CDX4O14627 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX4O14627 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.05■□□□□ 0.64
CDX4O14627 KRT16P6-202ENST00000425692 1426 ntBASIC19.05■□□□□ 0.64
CDX4O14627 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX4O14627 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX4O14627 Z98882.1-201ENST00000622160 2253 ntBASIC19.04■□□□□ 0.64
CDX4O14627 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX4O14627 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX4O14627 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CDX4O14627 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.04■□□□□ 0.64
CDX4O14627 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX4O14627 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.04■□□□□ 0.64
CDX4O14627 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.04■□□□□ 0.64
CDX4O14627 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.04■□□□□ 0.64
CDX4O14627 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
CDX4O14627 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.04■□□□□ 0.64
CDX4O14627 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX4O14627 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX4O14627 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CDX4O14627 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CDX4O14627 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDX4O14627 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDX4O14627 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.03■□□□□ 0.64
CDX4O14627 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 CA15P1-201ENST00000481698 905 ntBASIC19.03■□□□□ 0.64
CDX4O14627 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 AL024507.2-201ENST00000606070 2574 ntBASIC19.03■□□□□ 0.64
CDX4O14627 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX4O14627 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX4O14627 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.02■□□□□ 0.64
CDX4O14627 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX4O14627 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX4O14627 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDX4O14627 AC246785.2-201ENST00000432512 513 ntBASIC19.02■□□□□ 0.64
CDX4O14627 ATP5G2P1-201ENST00000433580 426 ntBASIC19.02■□□□□ 0.64
CDX4O14627 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX4O14627 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.02■□□□□ 0.64
CDX4O14627 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX4O14627 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.02■□□□□ 0.64
CDX4O14627 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX4O14627 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.02■□□□□ 0.64
CDX4O14627 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX4O14627 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CDX4O14627 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CDX4O14627 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 DPP3P2-201ENST00000416030 1696 ntBASIC19.01■□□□□ 0.63
CDX4O14627 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX4O14627 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.01■□□□□ 0.63
CDX4O14627 AC233723.2-201ENST00000623798 2106 ntBASIC19.01■□□□□ 0.63
CDX4O14627 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CDX4O14627 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.01■□□□□ 0.63
CDX4O14627 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDX4O14627 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms