Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.68■□□□□ 0.58
CACNA1AO00555 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1AO00555 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.68■□□□□ 0.58
CACNA1AO00555 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.68■□□□□ 0.58
CACNA1AO00555 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CACNA1AO00555 AC098831.1-202ENST00000438821 336 ntBASIC18.67■□□□□ 0.58
CACNA1AO00555 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.67■□□□□ 0.58
CACNA1AO00555 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.67■□□□□ 0.58
CACNA1AO00555 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.67■□□□□ 0.58
CACNA1AO00555 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.67■□□□□ 0.58
CACNA1AO00555 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.67■□□□□ 0.58
CACNA1AO00555 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.67■□□□□ 0.58
CACNA1AO00555 AL353801.3-201ENST00000609898 542 ntBASIC18.67■□□□□ 0.58
CACNA1AO00555 REXO1L6P-202ENST00000619970 1078 ntBASIC18.67■□□□□ 0.58
CACNA1AO00555 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.67■□□□□ 0.58
CACNA1AO00555 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CACNA1AO00555 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.66■□□□□ 0.58
CACNA1AO00555 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 AC112497.1-201ENST00000624824 639 ntBASIC18.66■□□□□ 0.58
CACNA1AO00555 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.66■□□□□ 0.58
CACNA1AO00555 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 AP000867.3-201ENST00000524675 377 ntBASIC18.66■□□□□ 0.58
CACNA1AO00555 LINC01711-201ENST00000598340 967 ntBASIC18.66■□□□□ 0.58
CACNA1AO00555 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.66■□□□□ 0.58
CACNA1AO00555 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CACNA1AO00555 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.65■□□□□ 0.58
CACNA1AO00555 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.65■□□□□ 0.58
CACNA1AO00555 RASA4DP-201ENST00000460726 1199 ntBASIC18.65■□□□□ 0.58
CACNA1AO00555 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CACNA1AO00555 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 AC093323.1-202ENST00000635031 2045 ntBASIC18.65■□□□□ 0.58
CACNA1AO00555 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CACNA1AO00555 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.65■□□□□ 0.58
CACNA1AO00555 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.65■□□□□ 0.58
CACNA1AO00555 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.65■□□□□ 0.58
CACNA1AO00555 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.65■□□□□ 0.58
CACNA1AO00555 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CACNA1AO00555 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.65■□□□□ 0.58
CACNA1AO00555 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CACNA1AO00555 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CACNA1AO00555 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.64■□□□□ 0.57
CACNA1AO00555 AP001005.1-201ENST00000571755 1248 ntBASIC18.64■□□□□ 0.57
CACNA1AO00555 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.64■□□□□ 0.57
CACNA1AO00555 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.64■□□□□ 0.57
CACNA1AO00555 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.64■□□□□ 0.57
CACNA1AO00555 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 AC243591.1-201ENST00000452967 1364 ntBASIC18.64■□□□□ 0.57
CACNA1AO00555 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CACNA1AO00555 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CACNA1AO00555 AP003041.3-201ENST00000527151 707 ntBASIC18.64■□□□□ 0.57
CACNA1AO00555 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.64■□□□□ 0.57
CACNA1AO00555 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CACNA1AO00555 AL162741.1-201ENST00000565563 1558 ntBASIC18.64■□□□□ 0.57
CACNA1AO00555 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1AO00555 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1AO00555 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1AO00555 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1AO00555 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CACNA1AO00555 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1AO00555 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1AO00555 AL031284.1-201ENST00000419297 478 ntBASIC18.63■□□□□ 0.57
CACNA1AO00555 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1AO00555 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.63■□□□□ 0.57
CACNA1AO00555 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1AO00555 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1AO00555 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1AO00555 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.62■□□□□ 0.57
CACNA1AO00555 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1AO00555 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms