Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 TUBB8P6-201ENST00000436895 1288 ntBASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 KRT8P26-201ENST00000534154 1276 ntBASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 AP001160.2-201ENST00000596071 487 ntBASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 AL353801.3-201ENST00000609898 542 ntBASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.97■■□□□ 1.11
CCDC85CA6NKD9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 AC098831.1-202ENST00000438821 336 ntBASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CCDC85CA6NKD9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC85CA6NKD9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 CA15P1-201ENST00000481698 905 ntBASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC85CA6NKD9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 RNPS1P1-201ENST00000507437 918 ntBASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 AC138894.3-201ENST00000603787 634 ntBASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC85CA6NKD9 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC85CA6NKD9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 RNA5SP419-201ENST00000515908 135 ntBASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC21.92■■□□□ 1.1
CCDC85CA6NKD9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms