Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 RBPJP6-201ENST00000411556 1431 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 FANCD2P2-201ENST00000437591 1400 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 SNORD94-201ENST00000386037 137 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 MT-TP-201ENST00000387461 68 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AP000357.1-201ENST00000409926 1165 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 HMGB3P31-201ENST00000413333 595 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 GAPDHP34-201ENST00000432112 823 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 PA2G4P1-201ENST00000442248 1197 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL356121.1-201ENST00000442911 156 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 CASP3P1-201ENST00000446037 609 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL035407.2-201ENST00000454090 378 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 OR2AF1P-201ENST00000454899 889 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC021205.1-201ENST00000468797 348 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC069528.1-202ENST00000482888 637 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC004815.1-201ENST00000484185 331 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 RN7SL612P-201ENST00000497704 295 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 CDH12P2-201ENST00000504393 298 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC034244.1-201ENST00000507687 207 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC119751.1-201ENST00000513357 765 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC068305.2-201ENST00000550567 1205 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ZNF321P-202ENST00000550843 495 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC009094.1-201ENST00000564443 426 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC106785.4-201ENST00000569492 412 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 Z94722.1-201ENST00000604328 474 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL513218.1-201ENST00000606527 391 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC007349.4-201ENST00000608114 532 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC096586.1-201ENST00000610267 561 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 MIR6885-201ENST00000612241 66 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL121895.2-201ENST00000619558 447 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC211486.4-201ENST00000621495 113 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL354702.2-202ENST00000641481 890 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC078880.4-201ENST00000617627 1749 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 AC112243.1-201ENST00000623949 3851 ntBASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.61□□□□□ -1.35
TRIM39Q9HCM9 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 SNORA38B-201ENST00000363524 131 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RNU1-24P-201ENST00000364285 165 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 SNORA7A-201ENST00000384765 139 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RNU6-316P-201ENST00000391027 107 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AL034417.1-201ENST00000399343 800 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AC096537.2-201ENST00000413707 714 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 BTF3P8-201ENST00000414577 526 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 RPS7P9-201ENST00000414704 586 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 PTCD2P2-201ENST00000415579 1095 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 Z68868.1-201ENST00000429048 544 ntBASIC6.6□□□□□ -1.35
TRIM39Q9HCM9 TRAPPC13P1-201ENST00000435991 1062 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms