Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 AC018797.1-201ENST00000510791 255 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 RNU6-319P-201ENST00000516025 108 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC5.16□□□□□ -1.58
SSX3Q99909 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SSX3Q99909 AC109635.6-201ENST00000525487 1113 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.16□□□□□ -1.58
SSX3Q99909 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.16□□□□□ -1.58
SSX3Q99909 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC5.16□□□□□ -1.58
SSX3Q99909 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.16□□□□□ -1.58
SSX3Q99909 SMIM12P1-201ENST00000603004 274 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 AC073046.2-201ENST00000604756 527 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 AL135999.3-201ENST00000610501 812 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 uc_338.31-201ENST00000615595 186 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.16□□□□□ -1.58
SSX3Q99909 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.16□□□□□ -1.58
SSX3Q99909 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SSX3Q99909 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SSX3Q99909 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.16□□□□□ -1.58
SSX3Q99909 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SSX3Q99909 AC011815.2-201ENST00000618230 2021 ntBASIC5.16□□□□□ -1.58
SSX3Q99909 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SSX3Q99909 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.16□□□□□ -1.58
SSX3Q99909 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SSX3Q99909 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.15□□□□□ -1.58
SSX3Q99909 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.58
SSX3Q99909 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.15□□□□□ -1.58
SSX3Q99909 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SSX3Q99909 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SSX3Q99909 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
SSX3Q99909 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SSX3Q99909 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SSX3Q99909 SAMMSON-213ENST00000641336 1521 ntBASIC5.15□□□□□ -1.58
SSX3Q99909 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SSX3Q99909 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SSX3Q99909 YWHAZP6-201ENST00000399764 738 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL023284.3-201ENST00000407767 334 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 DHFRP2-201ENST00000414224 547 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 CYCSP52-201ENST00000422857 310 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 Z85994.2-201ENST00000434327 452 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 MAPRE1P3-201ENST00000435438 796 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 GAPDHP59-201ENST00000435908 267 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 PCNPP2-201ENST00000441651 455 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.15□□□□□ -1.59
SSX3Q99909 RPSAP40-201ENST00000442343 891 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 GAPDHP14-201ENST00000450472 937 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL133244.1-201ENST00000456007 258 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 RPL31P53-201ENST00000457065 348 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 RPS4XP12-201ENST00000461747 709 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AC093827.1-201ENST00000480094 861 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AL035690.1-201ENST00000490892 383 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.15□□□□□ -1.59
SSX3Q99909 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.15□□□□□ -1.59
SSX3Q99909 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 RN7SKP70-201ENST00000516655 271 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 AC008429.4-201ENST00000521201 182 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.15□□□□□ -1.59
SSX3Q99909 AC084121.1-201ENST00000533882 835 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.15□□□□□ -1.59
SSX3Q99909 OR1E3-201ENST00000575608 948 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AC090616.1-201ENST00000583895 447 ntBASIC5.15□□□□□ -1.59
SSX3Q99909 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.15□□□□□ -1.59
SSX3Q99909 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.15□□□□□ -1.59
SSX3Q99909 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
SSX3Q99909 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.15□□□□□ -1.59
SSX3Q99909 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.15□□□□□ -1.59
SSX3Q99909 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.59
SSX3Q99909 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.15□□□□□ -1.59
SSX3Q99909 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SSX3Q99909 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SSX3Q99909 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.14□□□□□ -1.59
SSX3Q99909 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.14□□□□□ -1.59
SSX3Q99909 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SSX3Q99909 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SSX3Q99909 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.14□□□□□ -1.59
SSX3Q99909 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.14□□□□□ -1.59
SSX3Q99909 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.14□□□□□ -1.59
SSX3Q99909 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SSX3Q99909 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.14□□□□□ -1.59
SSX3Q99909 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SSX3Q99909 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms