Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC025262.3-201ENST00000623666 360 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AL132656.3-201ENST00000606384 1595 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC068870.3-201ENST00000625077 2536 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC138907.8-201ENST00000623981 2256 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 RN7SKP128-201ENST00000364270 303 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 MGAT2P2-201ENST00000427194 797 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 RPS3AP38-201ENST00000435889 763 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 VN1R110P-201ENST00000438988 971 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 TRBV5-2-201ENST00000489095 273 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC025458.1-201ENST00000506046 166 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 OR5H7P-201ENST00000514084 930 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 SETP21-201ENST00000514799 892 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 MIR2117-201ENST00000516780 80 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC007346.2-201ENST00000564816 892 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 GARSP1-201ENST00000570895 719 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 MIR4776-2-201ENST00000580204 80 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL499605.1-201ENST00000604628 403 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC145423.1-201ENST00000605712 336 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 MIR6793-201ENST00000612376 63 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL355974.3-201ENST00000617383 467 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL445670.1-201ENST00000618889 801 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC024884.1-201ENST00000620583 399 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AP003072.5-201ENST00000623872 773 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC069542.2-201ENST00000624816 216 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AL161756.3-201ENST00000641216 2071 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 AC003985.2-201ENST00000562268 1669 ntBASIC5.18□□□□□ -1.58
SKA3Q8IX90 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SKA3Q8IX90 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SKA3Q8IX90 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC005224.3-201ENST00000584683 2140 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AL359955.1-201ENST00000455242 3275 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 TMSB4XP2-201ENST00000335179 210 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 RNA5SP273-201ENST00000362484 113 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 RN7SKP275-201ENST00000364626 301 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 NACAP7-201ENST00000407371 609 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 RPL38P3-201ENST00000484463 213 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms