Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC079097.1-201ENST00000512187 1399 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
FOXA1P55317 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
FOXA1P55317 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
FOXA1P55317 RNU1-65P-201ENST00000363919 148 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.41□□□□□ -1.54
FOXA1P55317 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
FOXA1P55317 GPS2P1-201ENST00000411761 986 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC009506.2-201ENST00000420635 840 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.41□□□□□ -1.54
FOXA1P55317 AC073465.2-201ENST00000440938 498 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC002075.1-201ENST00000457396 676 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC005165.2-201ENST00000466070 380 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 RPS23P6-201ENST00000466136 431 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC105420.1-201ENST00000504389 582 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC021106.1-201ENST00000509020 1058 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 Vault.2-201ENST00000516519 98 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 AC002310.3-201ENST00000569728 723 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 MIR4311-201ENST00000580794 100 ntBASIC5.41□□□□□ -1.54
FOXA1P55317 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXA1P55317 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
FOXA1P55317 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
FOXA1P55317 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.41□□□□□ -1.54
FOXA1P55317 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXA1P55317 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
FOXA1P55317 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.4□□□□□ -1.54
FOXA1P55317 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
FOXA1P55317 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 AK4P4-201ENST00000419465 646 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.4□□□□□ -1.54
FOXA1P55317 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 HMGB3P24-201ENST00000433260 622 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.4□□□□□ -1.54
FOXA1P55317 TAAR4P-201ENST00000454843 1039 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.4□□□□□ -1.54
FOXA1P55317 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 AP000648.1-201ENST00000529682 397 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 AC026826.3-201ENST00000561747 158 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.4□□□□□ -1.54
FOXA1P55317 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.4□□□□□ -1.54
FOXA1P55317 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.4□□□□□ -1.54
FOXA1P55317 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.4□□□□□ -1.54
FOXA1P55317 AL031601.1-201ENST00000605702 394 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.4□□□□□ -1.54
FOXA1P55317 MIR6889-201ENST00000613185 59 ntBASIC5.4□□□□□ -1.54
FOXA1P55317 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
FOXA1P55317 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.4□□□□□ -1.54
FOXA1P55317 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.4□□□□□ -1.55
FOXA1P55317 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.4□□□□□ -1.55
FOXA1P55317 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.4□□□□□ -1.55
FOXA1P55317 SAMMSON-210ENST00000641260 1308 ntBASIC5.4□□□□□ -1.55
FOXA1P55317 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.4□□□□□ -1.55
FOXA1P55317 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
FOXA1P55317 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
FOXA1P55317 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
FOXA1P55317 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.39□□□□□ -1.55
FOXA1P55317 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.39□□□□□ -1.55
FOXA1P55317 MIR133A2-201ENST00000347538 102 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
FOXA1P55317 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.39□□□□□ -1.55
FOXA1P55317 RIMKLBP2-201ENST00000424737 654 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC127526.2-201ENST00000426436 775 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 RPL7P56-201ENST00000429441 717 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 LDHAP2-201ENST00000437325 985 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 AC006335.2-201ENST00000437993 330 ntBASIC5.39□□□□□ -1.55
FOXA1P55317 OR52E7P-201ENST00000452394 933 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms