Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNA5SP178-201ENST00000410380 128 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LMX1BO60663 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 SFR1P2-201ENST00000421841 730 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 SEPT14P12-201ENST00000442280 560 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 PPIAP7-201ENST00000454070 489 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 HLA-DPA3-207ENST00000454398 229 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 MTND6P32-201ENST00000457611 483 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 ACA64.4-201ENST00000459070 127 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.25□□□□□ -1.57
LMX1BO60663 RN7SKP288-201ENST00000516227 268 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 RNA5SP271-201ENST00000516700 88 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 RNU4-18P-201ENST00000516751 149 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 AP000620.1-201ENST00000527147 504 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.25□□□□□ -1.57
LMX1BO60663 AP003396.4-201ENST00000527574 265 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 HNRNPCP1-201ENST00000556181 766 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 NPM1P42-201ENST00000560329 862 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 MIR4701-201ENST00000583094 63 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 AC022387.2-201ENST00000604050 448 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC242628.1-201ENST00000606810 391 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 MIR6768-201ENST00000610734 72 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC008833.1-201ENST00000611633 691 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL138960.1-201ENST00000613838 513 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC004801.6-201ENST00000616571 978 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AC127024.6-201ENST00000621598 424 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 AL356490.1-201ENST00000623079 479 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.25□□□□□ -1.57
LMX1BO60663 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 AL512283.1-201ENST00000606756 1384 ntBASIC5.25□□□□□ -1.57
LMX1BO60663 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LMX1BO60663 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LMX1BO60663 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.25□□□□□ -1.57
LMX1BO60663 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.25□□□□□ -1.57
LMX1BO60663 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 AC138907.8-201ENST00000623981 2256 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 OR2W4P-201ENST00000406496 926 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 CR848007.2-201ENST00000424918 787 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 UBE2V1P6-201ENST00000430840 422 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 Z85994.2-201ENST00000434327 452 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 AC074367.1-201ENST00000438685 1125 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL590004.3-202ENST00000445883 451 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.24□□□□□ -1.57
LMX1BO60663 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 RPL23AP60-201ENST00000450011 454 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 SEPT7P6-201ENST00000469999 1143 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 TRBV5-2-201ENST00000489095 273 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC104629.1-201ENST00000494226 508 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 CCDC11P1-201ENST00000503137 1162 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 HAUS1P1-201ENST00000505275 832 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC008628.1-201ENST00000508663 265 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC022826.1-201ENST00000519383 805 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 NATP-201ENST00000523491 878 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.24□□□□□ -1.57
LMX1BO60663 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 AC007956.1-201ENST00000555623 542 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL049779.3-201ENST00000557141 606 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC009268.1-201ENST00000561352 1203 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms