Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.51□□□□□ -1.37
USP39Q53GS9 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
USP39Q53GS9 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
USP39Q53GS9 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC013488.1-201ENST00000526618 1838 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 Y_RNA.505-201ENST00000384489 102 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 DHFRP2-201ENST00000414224 547 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AL512504.1-201ENST00000415494 778 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 MTCO1P51-201ENST00000427672 1060 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 RPS6P15-201ENST00000431996 751 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC097463.1-201ENST00000447288 481 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC090589.1-201ENST00000473109 362 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 RPL5P14-201ENST00000494197 878 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 SCARNA21.2-201ENST00000516600 166 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 RPP40P2-201ENST00000603596 712 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AC015849.6-201ENST00000605454 474 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC092681.3-201ENST00000609463 678 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 AC097460.3-201ENST00000623099 442 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AC129778.1-202ENST00000623812 261 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AL591379.1-207ENST00000635982 261 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 MTCO1P28-201ENST00000574177 1528 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.5□□□□□ -1.37
USP39Q53GS9 EEF1A1P21-201ENST00000512363 1344 ntBASIC6.5□□□□□ -1.37
USP39Q53GS9 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
USP39Q53GS9 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 KARSP1-201ENST00000451871 1752 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
USP39Q53GS9 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC025809.2-201ENST00000625085 1802 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 RNA5SP510-201ENST00000364697 99 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
USP39Q53GS9 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 VN1R40P-201ENST00000455196 941 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC010486.3-201ENST00000511602 785 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms