Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 NEPNP-201ENST00000404786 1371 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.67□□□□□ -1.5
SHMT2P34897 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 RNA5SP500-201ENST00000364486 119 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 RNA5SP510-201ENST00000364697 99 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 AC017078.1-201ENST00000416146 368 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 AC019205.1-201ENST00000421830 730 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 BX323845.3-201ENST00000428215 527 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 RPS12P17-201ENST00000438591 377 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 CR383656.1-201ENST00000484916 377 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 MIR2117-201ENST00000516780 80 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 SNORA70.20-201ENST00000516848 126 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.67□□□□□ -1.5
SHMT2P34897 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 MIR4433B-201ENST00000581329 102 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 RPL12P48-201ENST00000605620 304 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 AC069542.2-201ENST00000624816 216 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 OR11H2-202ENST00000641517 1085 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SHMT2P34897 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 AC093671.1-201ENST00000624981 2929 ntBASIC5.67□□□□□ -1.5
SHMT2P34897 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHMT2P34897 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
SHMT2P34897 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHMT2P34897 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHMT2P34897 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.66□□□□□ -1.5
SHMT2P34897 ADAM24P-201ENST00000398655 2101 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AP001284.1-201ENST00000528393 2118 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AC005224.3-201ENST00000584683 2140 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SHMT2P34897 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SHMT2P34897 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.66□□□□□ -1.5
SHMT2P34897 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 NPM1P38-201ENST00000403835 865 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHMT2P34897 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.66□□□□□ -1.5
SHMT2P34897 RN7SKP29-201ENST00000410957 272 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AC245060.4-201ENST00000413293 1121 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 EEF1B2P8-201ENST00000414101 671 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 AL354766.1-201ENST00000423396 542 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 OR5W1P-201ENST00000423705 938 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 RPS29P14-201ENST00000431518 171 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHMT2P34897 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.66□□□□□ -1.5
SHMT2P34897 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 AL445665.1-202ENST00000452436 324 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.66□□□□□ -1.5
SHMT2P34897 AC093166.4-201ENST00000457867 318 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 NENFP3-201ENST00000503735 313 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 IGKV2-4-201ENST00000523070 340 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 TRIM51DP-201ENST00000529746 596 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AC090424.1-201ENST00000535243 736 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHMT2P34897 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.66□□□□□ -1.5
SHMT2P34897 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.66□□□□□ -1.5
SHMT2P34897 AL583832.1-201ENST00000603227 784 ntBASIC5.66□□□□□ -1.5
SHMT2P34897 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.66□□□□□ -1.5
SHMT2P34897 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.66□□□□□ -1.5
SHMT2P34897 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.66□□□□□ -1.5
SHMT2P34897 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms