Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SYNE1Q8NF91 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SYNE1Q8NF91 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
SYNE1Q8NF91 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 A2MP1-204ENST00000566278 4130 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RNA5SP178-201ENST00000410380 128 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RPS21P8-201ENST00000413365 247 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RNU6-615P-201ENST00000516065 106 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC073581.1-201ENST00000519036 575 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL035661.1-201ENST00000620459 1144 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC074141.1-201ENST00000588129 2995 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AP002370.1-201ENST00000528055 1602 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 SDHDP6-201ENST00000414693 480 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL035660.1-201ENST00000422041 222 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PTMAP6-201ENST00000439110 327 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL122020.1-201ENST00000472287 459 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC117395.1-201ENST00000487390 403 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL049840.6-201ENST00000604583 345 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 U3.7-201ENST00000363668 216 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RNU4ATAC2P-201ENST00000408674 126 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RPS7P8-201ENST00000418311 581 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC113412.1-201ENST00000425840 504 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL445928.1-201ENST00000435545 222 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 OR7E116P-201ENST00000448529 957 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL138960.1-201ENST00000613838 513 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 RNA5SP30-201ENST00000365552 115 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AL645927.1-201ENST00000396783 406 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC023245.1-201ENST00000468501 517 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 HAUS8P1-201ENST00000549005 542 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC024255.1-201ENST00000614376 102 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC008115.3-201ENST00000614874 549 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 AC117409.1-201ENST00000470499 1310 ntBASIC1.78□□□□□ -2.12
SYNE1Q8NF91 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC1.78□□□□□ -2.12
SYNE1Q8NF91 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms