Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC245014.3-201ENST00000618589 347 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 QRSL1P1-201ENST00000400977 1540 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 CASC19-238ENST00000641523 1558 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 CXADRP1-201ENST00000398098 1095 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 VN1R12P-201ENST00000403778 876 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC099677.3-201ENST00000427081 395 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AL121578.1-201ENST00000428051 892 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 RPL5P25-201ENST00000441148 775 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 RPS7P3-201ENST00000443360 580 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 GAPDHP14-201ENST00000450472 937 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 CFL1P4-201ENST00000451536 498 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AP002884.1-201ENST00000479691 655 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 LSM3P4-201ENST00000502948 309 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 FTH1P11-201ENST00000517577 551 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AP003396.4-201ENST00000527574 265 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC027369.2-201ENST00000528030 440 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC027216.1-201ENST00000577726 685 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC005244.1-201ENST00000582566 339 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 AC108673.3-201ENST00000609183 335 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 MIR6809-201ENST00000612189 116 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 CXADRP3-202ENST00000617265 1100 ntBASIC5.22□□□□□ -1.57
SKA3Q8IX90 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
SKA3Q8IX90 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SKA3Q8IX90 MRRFP1-201ENST00000435941 1675 ntBASIC5.21□□□□□ -1.57
SKA3Q8IX90 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.21□□□□□ -1.57
SKA3Q8IX90 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
SKA3Q8IX90 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 SELENOWP1-201ENST00000322792 252 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 RN7SKP69-201ENST00000365390 305 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 RNA5SP211-201ENST00000365516 117 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC004386.1-201ENST00000393214 761 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 RNU2-18P-201ENST00000411224 162 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 GNG5P5-201ENST00000420444 220 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AL445928.1-201ENST00000435545 222 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 BMS1P10-201ENST00000443754 1120 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 NPM1P19-201ENST00000450070 712 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 OSTCP1-201ENST00000455507 450 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 CST12P-201ENST00000457644 362 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC244502.2-201ENST00000543361 851 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC007956.1-201ENST00000555623 542 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC090236.2-201ENST00000587933 1101 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms