Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AC068538.1-201ENST00000376856 336 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AC239367.2-201ENST00000447309 705 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 CREM-230ENST00000474931 626 ntTSL 2 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 RN7SL447P-201ENST00000494711 245 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 SLC25A15P5-201ENST00000508033 253 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 MIR4301-201ENST00000577203 66 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AC006116.3-201ENST00000592968 361 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AL133406.3-201ENST00000606817 541 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AP002799.1-201ENST00000623552 423 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 MAPK10-350ENST00000641777 965 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 AL590004.4-201ENST00000566733 7060 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 RNA5SP305-201ENST00000362665 119 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 RPS27AP6-201ENST00000427962 448 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 RHOT1P3-201ENST00000436571 331 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 RPL37AP8-201ENST00000494116 276 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 IGHVIII-47-1-201ENST00000518187 331 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 SS18L2P2-201ENST00000583960 235 ntBASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 RNU1-32P-201ENST00000363937 159 ntBASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC073410.1-201ENST00000435125 589 ntBASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC013701.1-201ENST00000522657 465 ntBASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 MIR7703-201ENST00000620784 77 ntBASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHANK3Q9BYB0 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 AL162456.1-201ENST00000634535 2006 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 RN7SKP113-201ENST00000363891 295 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 MIR192-201ENST00000384915 110 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 HNRNPDLP2-201ENST00000455248 751 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 RN7SL205P-201ENST00000490174 284 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 IGBP1P5-201ENST00000507524 1000 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 C1GALT1P3-201ENST00000522049 819 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 AP000919.1-201ENST00000582850 985 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 RN7SL52P-201ENST00000584271 284 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 RN7SL722P-201ENST00000617780 284 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 RN7SL565P-201ENST00000618246 284 ntBASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHANK3Q9BYB0 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms