Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 AL138693.1-201ENST00000622219 129 ntBASIC6.14□□□□□ -1.43
CCDC42Q96M95 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC42Q96M95 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC42Q96M95 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC42Q96M95 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC42Q96M95 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 RNA5SP326-201ENST00000363209 110 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 U3.28-201ENST00000391249 210 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 RN7SKP29-201ENST00000410957 272 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AC097463.1-201ENST00000447288 481 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 OR52I1-201ENST00000450052 1050 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 RNU2-45P-201ENST00000516068 187 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AGGF1P7-201ENST00000562369 913 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 MIR6809-201ENST00000612189 116 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 MIR6774-201ENST00000614651 70 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 AC005899.6-201ENST00000620729 297 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC42Q96M95 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC42Q96M95 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AP001029.2-203ENST00000589795 4910 ntBASIC6.13□□□□□ -1.43
CCDC42Q96M95 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC42Q96M95 AP005435.3-201ENST00000531260 3198 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC42Q96M95 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC42Q96M95 SNORA5.1-201ENST00000384275 131 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 VTI1BP4-201ENST00000427516 527 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 GAPDHP48-201ENST00000436626 961 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC098847.1-201ENST00000473094 348 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC112484.3-201ENST00000505910 329 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC139365.2-201ENST00000517972 253 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC009879.1-201ENST00000520029 839 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AP001000.1-201ENST00000526843 742 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC42Q96M95 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AL360270.2-201ENST00000562952 5985 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC096996.1-201ENST00000563813 325 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 MIR4776-2-201ENST00000580204 80 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AL022394.1-201ENST00000606979 292 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AL139124.1-201ENST00000609123 421 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 uc_338.31-201ENST00000615595 186 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC005261.6-201ENST00000623072 1387 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC021766.1-201ENST00000624404 741 ntBASIC6.12□□□□□ -1.43
CCDC42Q96M95 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC42Q96M95 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC42Q96M95 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.12□□□□□ -1.43
CCDC42Q96M95 AC068870.1-201ENST00000563737 2455 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
CCDC42Q96M95 LINC02019-201ENST00000608605 2060 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC42Q96M95 AL354854.1-201ENST00000455940 1363 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 SNORA51.9-201ENST00000384295 124 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 MIR130B-202ENST00000385018 82 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 AL357752.1-201ENST00000412817 349 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 NIFKP3-201ENST00000417799 865 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC42Q96M95 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC42Q96M95 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC42Q96M95 RPL6P30-201ENST00000443382 862 ntBASIC6.11□□□□□ -1.43
CCDC42Q96M95 RPL5P7-201ENST00000444235 813 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms