Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AL603750.1-201ENST00000624216 1717 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AL096711.1-201ENST00000404780 554 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 RPL35AP3-201ENST00000414680 288 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 RPS27AP6-201ENST00000427962 448 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC069154.1-201ENST00000432914 542 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC005077.1-201ENST00000449226 375 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 PPIAP27-201ENST00000453800 265 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC104164.1-201ENST00000460282 590 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 RN7SL269P-201ENST00000467795 305 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC092865.4-201ENST00000477936 615 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC008629.2-201ENST00000503783 483 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 RN7SKP288-201ENST00000516227 268 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 NPM1P42-201ENST00000560329 862 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC069234.4-201ENST00000621276 412 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC012254.3-201ENST00000591183 2117 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 AC133552.1-201ENST00000569988 4007 ntBASIC5.24□□□□□ -1.57
SKA3Q8IX90 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SKA3Q8IX90 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SKA3Q8IX90 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 IFIT1P1-201ENST00000400497 1449 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 HSPA8P14-201ENST00000552265 1805 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 RNFT1P3-201ENST00000340898 1052 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AL096800.1-201ENST00000405326 893 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AL158827.1-201ENST00000416300 391 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC110602.1-201ENST00000437414 318 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC023245.1-201ENST00000468501 517 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 RNA5SP340-201ENST00000517132 107 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC021733.2-201ENST00000518830 497 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC079905.1-201ENST00000549280 475 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 RPA2P1-201ENST00000556557 721 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC107958.1-201ENST00000556576 290 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AL049779.3-201ENST00000557141 606 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 CYCSP38-201ENST00000559840 322 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 MIR4271-201ENST00000582451 67 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SKA3Q8IX90 AL161912.3-201ENST00000605404 628 ntBASIC5.23□□□□□ -1.57
SKA3Q8IX90 AL021918.2-201ENST00000613415 194 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms