Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC068768.2-201ENST00000602352 343 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AL445649.1-201ENST00000615941 691 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 RFPL4AP6-201ENST00000616792 846 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 HPVC1-201ENST00000629899 1198 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC106872.5-201ENST00000508856 1416 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 HSPD1P8-201ENST00000400121 1658 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC062022.1-201ENST00000451026 1684 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC079753.1-201ENST00000623243 3868 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 RNA5SP132-201ENST00000364725 118 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 RPL37P18-201ENST00000411602 243 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC091685.2-201ENST00000454924 864 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC104849.1-201ENST00000462623 405 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 RPL5P14-201ENST00000494197 878 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 COL6A4P2-205ENST00000509855 506 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 CDH12P4-201ENST00000517835 295 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 CDH12P3-201ENST00000517935 295 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 CDH12P1-201ENST00000518435 295 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC108673.3-201ENST00000609183 335 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AC004836.1-201ENST00000623032 634 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AL731556.1-201ENST00000394628 3711 ntBASIC5.97□□□□□ -1.45
COL28A1Q2UY09 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL28A1Q2UY09 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 AC008627.1-201ENST00000517511 1704 ntBASIC5.96□□□□□ -1.45
COL28A1Q2UY09 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.96□□□□□ -1.45
COL28A1Q2UY09 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 RNFT1P3-201ENST00000340898 1052 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 RNU6-1331P-201ENST00000363658 106 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC245060.4-201ENST00000413293 1121 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 MTND2P11-201ENST00000423638 648 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC130360.1-201ENST00000425489 1117 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AL445528.1-201ENST00000426330 420 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 NDUFS5P5-201ENST00000437256 321 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.96□□□□□ -1.46
COL28A1Q2UY09 AC016687.1-201ENST00000482574 353 ntBASIC5.96□□□□□ -1.46
COL28A1Q2UY09 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms