Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC009362.1-201ENST00000427253 406 ntBASIC6.64□□□□□ -1.35
RNF4P78317 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 AL645936.2-201ENST00000430565 928 ntBASIC6.64□□□□□ -1.35
RNF4P78317 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 RNU6-956P-201ENST00000458868 103 ntBASIC6.64□□□□□ -1.35
RNF4P78317 WBP1LP1-201ENST00000460451 896 ntBASIC6.64□□□□□ -1.35
RNF4P78317 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 RN7SL88P-201ENST00000480166 299 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC073648.3-201ENST00000504939 925 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC146944.3-201ENST00000509969 371 ntBASIC6.64□□□□□ -1.35
RNF4P78317 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 AP001803.1-201ENST00000525668 147 ntBASIC6.64□□□□□ -1.35
RNF4P78317 OR5AK3P-201ENST00000527486 1297 ntBASIC6.64□□□□□ -1.35
RNF4P78317 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
RNF4P78317 PDCL3P1-201ENST00000534575 734 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC6.64□□□□□ -1.35
RNF4P78317 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 AC009729.1-201ENST00000548873 1133 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL133241.1-201ENST00000556832 487 ntBASIC6.64□□□□□ -1.35
RNF4P78317 ATP5F1P7-201ENST00000567330 760 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC6.64□□□□□ -1.35
RNF4P78317 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC6.64□□□□□ -1.35
RNF4P78317 BNIP3P30-201ENST00000601184 574 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL049840.5-201ENST00000602827 552 ntBASIC6.64□□□□□ -1.35
RNF4P78317 WISP1-OT1-201ENST00000602893 642 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL136363.2-201ENST00000604173 851 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC067959.1-201ENST00000604334 379 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC092960.1-201ENST00000604762 351 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC100767.2-201ENST00000604840 693 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC022509.4-201ENST00000621404 572 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 AC068137.3-201ENST00000639191 341 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AC073869.6-201ENST00000640656 341 ntBASIC6.64□□□□□ -1.35
RNF4P78317 AL356585.10-201ENST00000641883 123 ntBASIC6.64□□□□□ -1.35
RNF4P78317 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
RNF4P78317 ACTG2-203ENST00000409731 1413 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 CASC19-206ENST00000641028 1430 ntBASIC6.64□□□□□ -1.35
RNF4P78317 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 PSG10P-201ENST00000501199 1500 ntBASIC6.64□□□□□ -1.35
RNF4P78317 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC6.64□□□□□ -1.35
RNF4P78317 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.64□□□□□ -1.35
RNF4P78317 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
RNF4P78317 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.64□□□□□ -1.35
RNF4P78317 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.63□□□□□ -1.35
RNF4P78317 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 SNORA70.5-201ENST00000365519 135 ntBASIC6.63□□□□□ -1.35
RNF4P78317 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC6.63□□□□□ -1.35
RNF4P78317 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 Y_RNA.516-201ENST00000384541 124 ntBASIC6.63□□□□□ -1.35
RNF4P78317 MIR152-201ENST00000385212 87 ntBASIC6.63□□□□□ -1.35
RNF4P78317 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
RNF4P78317 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 VDAC2P1-201ENST00000399358 958 ntBASIC6.63□□□□□ -1.35
RNF4P78317 RNU6ATAC25P-201ENST00000408798 117 ntBASIC6.63□□□□□ -1.35
RNF4P78317 RN7SKP142-201ENST00000411236 328 ntBASIC6.63□□□□□ -1.35
RNF4P78317 FCF1P9-201ENST00000412546 282 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC6.63□□□□□ -1.35
RNF4P78317 UQCRHP1-204ENST00000424609 274 ntBASIC6.63□□□□□ -1.35
RNF4P78317 OR5AW1P-201ENST00000426334 1006 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC009784.1-201ENST00000426484 460 ntBASIC6.63□□□□□ -1.35
RNF4P78317 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 AL022331.1-201ENST00000429025 477 ntBASIC6.63□□□□□ -1.35
RNF4P78317 YWHAEP5-201ENST00000431545 765 ntBASIC6.63□□□□□ -1.35
RNF4P78317 RPSAP32-201ENST00000432681 526 ntBASIC6.63□□□□□ -1.35
RNF4P78317 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 OFD1P17-201ENST00000437639 3018 ntBASIC6.63□□□□□ -1.35
RNF4P78317 OSTCP2-201ENST00000437956 444 ntBASIC6.63□□□□□ -1.35
RNF4P78317 PA2G4P6-201ENST00000438325 1197 ntBASIC6.63□□□□□ -1.35
RNF4P78317 MTND4P25-201ENST00000441039 533 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AL357520.1-201ENST00000441557 453 ntBASIC6.63□□□□□ -1.35
RNF4P78317 MTND6P5-201ENST00000448266 512 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 AC005517.1-201ENST00000452091 489 ntBASIC6.63□□□□□ -1.35
RNF4P78317 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 RN7SL325P-201ENST00000460434 283 ntBASIC6.63□□□□□ -1.35
RNF4P78317 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.63□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms