Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 DEFB109A-201ENST00000482450 265 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 GOLGA5P1-201ENST00000507317 980 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 AC009879.1-201ENST00000520029 839 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.3□□□□□ -1.4
HDAC4P56524 NPM1P5-201ENST00000557228 838 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HDAC4P56524 MIR4502-201ENST00000580432 81 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.3□□□□□ -1.4
HDAC4P56524 AC005520.3-201ENST00000602874 370 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 BX322635.1-201ENST00000605804 496 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 CASC19-274ENST00000642018 970 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDAC4P56524 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.3□□□□□ -1.4
HDAC4P56524 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDAC4P56524 AL354854.1-201ENST00000455940 1363 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 AC114876.1-201ENST00000490962 1366 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HDAC4P56524 AP000473.2-201ENST00000602659 1537 ntBASIC6.3□□□□□ -1.4
HDAC4P56524 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.29□□□□□ -1.4
HDAC4P56524 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 RNA5SP435-201ENST00000364044 108 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 SNORA51.9-201ENST00000384295 124 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AL591135.1-201ENST00000401578 5914 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 USP9YP19-201ENST00000412165 485 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.29□□□□□ -1.4
HDAC4P56524 AC245096.1-201ENST00000413104 546 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.29□□□□□ -1.4
HDAC4P56524 RPS26P38-201ENST00000414476 348 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AC016769.2-201ENST00000414815 475 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 RPL12P12-201ENST00000424633 501 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.29□□□□□ -1.4
HDAC4P56524 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 AL162739.1-201ENST00000450606 307 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AL049829.1-201ENST00000465411 156 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC6.29□□□□□ -1.4
HDAC4P56524 RPL23AP40-201ENST00000487630 390 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
HDAC4P56524 AL158068.1-201ENST00000506116 616 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 TOMM20P1-201ENST00000534518 427 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AC244502.2-201ENST00000543361 851 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.29□□□□□ -1.4
HDAC4P56524 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 AC092332.1-201ENST00000563684 829 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.29□□□□□ -1.4
HDAC4P56524 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.29□□□□□ -1.4
HDAC4P56524 AL499605.1-201ENST00000604628 403 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 AC004801.6-201ENST00000616571 978 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 AC073488.3-201ENST00000631611 778 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 MIR1910-201ENST00000636955 80 ntBASIC6.29□□□□□ -1.4
HDAC4P56524 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
HDAC4P56524 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.29□□□□□ -1.4
HDAC4P56524 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDAC4P56524 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
HDAC4P56524 AC008627.1-201ENST00000517511 1704 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HDAC4P56524 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 OR10R3P-201ENST00000361688 942 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.28□□□□□ -1.4
HDAC4P56524 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 MIR130B-202ENST00000385018 82 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
HDAC4P56524 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.28□□□□□ -1.4
HDAC4P56524 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.28□□□□□ -1.4
HDAC4P56524 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HDAC4P56524 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.28□□□□□ -1.4
HDAC4P56524 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.28□□□□□ -1.4
HDAC4P56524 TRIM60P16-201ENST00000444048 694 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC6.28□□□□□ -1.4
HDAC4P56524 AC093166.3-201ENST00000448785 303 ntBASIC6.28□□□□□ -1.4
HDAC4P56524 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.28□□□□□ -1.4
HDAC4P56524 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms