Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC8.02□□□□□ -1.13
MSH6P52701 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 AC023141.8-201ENST00000442554 208 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AP000547.1-201ENST00000454360 617 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AL035090.1-201ENST00000454835 332 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AC083982.1-201ENST00000485679 344 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC8.02□□□□□ -1.13
MSH6P52701 RNU6ATAC24P-201ENST00000516811 135 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AC139365.2-201ENST00000517972 253 ntBASIC8.02□□□□□ -1.13
MSH6P52701 OR11J2P-201ENST00000555298 907 ntBASIC8.02□□□□□ -1.13
MSH6P52701 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 AC006116.3-201ENST00000592968 361 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AC011497.2-201ENST00000600255 639 ntBASIC8.02□□□□□ -1.13
MSH6P52701 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC8.02□□□□□ -1.13
MSH6P52701 AC010435.1-201ENST00000623353 1177 ntBASIC8.02□□□□□ -1.13
MSH6P52701 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 CASC22-202ENST00000628396 802 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
MSH6P52701 AL035419.1-201ENST00000397037 564 ntBASIC8.01□□□□□ -1.13
MSH6P52701 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC8.01□□□□□ -1.13
MSH6P52701 AL663074.2-201ENST00000440621 479 ntBASIC8.01□□□□□ -1.13
MSH6P52701 VDAC2P4-201ENST00000452925 711 ntBASIC8.01□□□□□ -1.13
MSH6P52701 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC8.01□□□□□ -1.13
MSH6P52701 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC8.01□□□□□ -1.13
MSH6P52701 AC074050.1-201ENST00000563247 211 ntBASIC8.01□□□□□ -1.13
MSH6P52701 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC8.01□□□□□ -1.13
MSH6P52701 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 AL391261.1-201ENST00000555712 1479 ntBASIC8.01□□□□□ -1.13
MSH6P52701 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC8.01□□□□□ -1.13
MSH6P52701 API5-210ENST00000534600 1760 ntTSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
MSH6P52701 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
MSH6P52701 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC8□□□□□ -1.13
MSH6P52701 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
MSH6P52701 RNU4-2-201ENST00000365668 141 ntBASIC8□□□□□ -1.13
MSH6P52701 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC8□□□□□ -1.13
MSH6P52701 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC8□□□□□ -1.13
MSH6P52701 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 RN7SL570P-201ENST00000484405 292 ntBASIC8□□□□□ -1.13
MSH6P52701 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC8□□□□□ -1.13
MSH6P52701 AC012616.1-201ENST00000600294 197 ntBASIC8□□□□□ -1.13
MSH6P52701 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC8□□□□□ -1.13
MSH6P52701 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC8□□□□□ -1.13
MSH6P52701 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 AC016251.2-201ENST00000623393 3089 ntBASIC8□□□□□ -1.13
MSH6P52701 CASC19-243ENST00000641588 1546 ntBASIC8□□□□□ -1.13
MSH6P52701 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
MSH6P52701 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC8□□□□□ -1.13
MSH6P52701 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC8□□□□□ -1.13
MSH6P52701 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC8□□□□□ -1.13
MSH6P52701 LRRC37A16P-202ENST00000586022 3725 ntBASIC8□□□□□ -1.13
MSH6P52701 AC092692.1-201ENST00000623625 2595 ntBASIC8□□□□□ -1.13
MSH6P52701 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC8□□□□□ -1.13
MSH6P52701 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC8□□□□□ -1.13
MSH6P52701 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC8□□□□□ -1.13
MSH6P52701 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC8□□□□□ -1.13
MSH6P52701 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC8□□□□□ -1.13
MSH6P52701 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSH6P52701 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC7.99□□□□□ -1.13
MSH6P52701 CYB5AP4-201ENST00000396692 399 ntBASIC7.99□□□□□ -1.13
MSH6P52701 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
MSH6P52701 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.99□□□□□ -1.13
MSH6P52701 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.99□□□□□ -1.13
MSH6P52701 AL389915.2-201ENST00000454576 441 ntBASIC7.99□□□□□ -1.13
MSH6P52701 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC7.99□□□□□ -1.13
MSH6P52701 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC7.99□□□□□ -1.13
MSH6P52701 AL022394.1-201ENST00000606979 292 ntBASIC7.99□□□□□ -1.13
MSH6P52701 AC000068.2-201ENST00000608816 460 ntBASIC7.99□□□□□ -1.13
MSH6P52701 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.99□□□□□ -1.13
MSH6P52701 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.99□□□□□ -1.13
MSH6P52701 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms