Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC233266.2-201ENST00000567067 528 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC073046.2-201ENST00000604756 527 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 SNORA74.4-201ENST00000607595 199 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
HMGB1P09429 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC217777.1-201ENST00000570034 1471 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC7.54□□□□□ -1.2
HMGB1P09429 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
HMGB1P09429 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC7.54□□□□□ -1.2
HMGB1P09429 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 AL450326.2-201ENST00000421913 1962 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 SNORA70H-201ENST00000383910 135 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 SNORA70J-201ENST00000384182 135 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 SNORA68.2-201ENST00000391263 128 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC7.54□□□□□ -1.2
HMGB1P09429 ARL2BPP3-201ENST00000421226 480 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC128677.1-201ENST00000436016 442 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 MTCYBP21-201ENST00000443300 1113 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.54□□□□□ -1.2
HMGB1P09429 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 RN7SL393P-201ENST00000463588 296 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 RN7SL643P-201ENST00000471845 291 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC010343.2-201ENST00000510162 224 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC7.54□□□□□ -1.2
HMGB1P09429 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC7.54□□□□□ -1.2
HMGB1P09429 IGKV2D-10-201ENST00000520194 281 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 IGHV4-55-201ENST00000520889 368 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC7.54□□□□□ -1.2
HMGB1P09429 AC009237.12-201ENST00000604755 742 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC004775.1-201ENST00000607389 753 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC7.54□□□□□ -1.2
HMGB1P09429 MIR6774-201ENST00000614651 70 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC7.54□□□□□ -1.2
HMGB1P09429 AC211486.4-201ENST00000621495 113 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC090617.9-201ENST00000623751 147 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 AC107027.3-201ENST00000565095 3473 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC7.54□□□□□ -1.2
HMGB1P09429 AC024651.2-201ENST00000562480 2098 ntBASIC7.54□□□□□ -1.2
HMGB1P09429 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC7.54□□□□□ -1.2
HMGB1P09429 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
HMGB1P09429 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC7.53□□□□□ -1.2
HMGB1P09429 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC7.53□□□□□ -1.2
HMGB1P09429 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
HMGB1P09429 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
HMGB1P09429 OLMALINC-203ENST00000641087 3779 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
HMGB1P09429 AC093311.1-201ENST00000506586 2021 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 SNORA62.2-201ENST00000364672 152 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 RNA5SP85-201ENST00000365378 119 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 TAF9BP2-201ENST00000400856 499 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 RNU4-74P-201ENST00000411280 161 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
HMGB1P09429 NAP1L4P2-201ENST00000425958 899 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 RPS4XP16-201ENST00000427198 791 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC7.53□□□□□ -1.2
HMGB1P09429 FO393419.3-201ENST00000428741 282 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 GAPDHP19-201ENST00000431768 1005 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 MTND4P15-201ENST00000437913 1033 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AC092013.1-201ENST00000438795 332 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AL022237.1-201ENST00000446663 358 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC7.53□□□□□ -1.2
HMGB1P09429 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC7.53□□□□□ -1.2
HMGB1P09429 AC093664.1-201ENST00000511779 289 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC7.53□□□□□ -1.2
HMGB1P09429 AC093816.1-201ENST00000515076 913 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AC103833.1-201ENST00000517442 172 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 IGLVIV-64-201ENST00000518581 301 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AC027369.2-201ENST00000528030 440 ntBASIC7.53□□□□□ -1.2
HMGB1P09429 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC7.53□□□□□ -1.2
HMGB1P09429 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC7.53□□□□□ -1.2
HMGB1P09429 MYL2-203ENST00000548438 664 ntTSL 3 BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms