Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC7.42□□□□□ -1.22
COL3A1P02461 AP000864.1-201ENST00000609424 650 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 CGA-206ENST00000630630 832 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 MARK2P4-201ENST00000503381 2380 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 AC009779.8-201ENST00000641684 4384 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 TTC3P1-201ENST00000399586 6081 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC7.41□□□□□ -1.22
COL3A1P02461 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.41□□□□□ -1.22
COL3A1P02461 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
COL3A1P02461 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.41□□□□□ -1.22
COL3A1P02461 RPL35AP24-201ENST00000413846 330 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.41□□□□□ -1.22
COL3A1P02461 HSFY1P1-201ENST00000423928 1178 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 TMEM183AP1-205ENST00000432739 290 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC7.41□□□□□ -1.22
COL3A1P02461 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7.41□□□□□ -1.22
COL3A1P02461 NMNAT1P5-201ENST00000559657 841 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 OR7E18P-201ENST00000592589 702 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.41□□□□□ -1.22
COL3A1P02461 AP000769.2-201ENST00000602344 396 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 AC105148.1-201ENST00000604961 409 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.41□□□□□ -1.22
COL3A1P02461 MIR6798-201ENST00000612887 67 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 AC136428.4-201ENST00000634254 1155 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 AC093829.1-201ENST00000506662 1618 ntBASIC7.41□□□□□ -1.22
COL3A1P02461 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
COL3A1P02461 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
COL3A1P02461 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 AC016745.2-201ENST00000608834 3443 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC073365.1-203ENST00000641055 1992 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 FGG-205ENST00000407946 1636 ntTSL 5 BASIC7.4□□□□□ -1.22
COL3A1P02461 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL3A1P02461 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
COL3A1P02461 CYP2AC1P-201ENST00000407830 1173 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC7.4□□□□□ -1.22
COL3A1P02461 CYCSP12-201ENST00000437729 300 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC7.4□□□□□ -1.22
COL3A1P02461 MEMO1P4-201ENST00000453590 386 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 AL133445.1-201ENST00000467051 452 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 SIAH1P1-201ENST00000479411 923 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC7.4□□□□□ -1.22
COL3A1P02461 PMS2P3-207ENST00000529061 717 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC7.4□□□□□ -1.22
COL3A1P02461 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.4□□□□□ -1.22
COL3A1P02461 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 AC015720.2-201ENST00000567709 334 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
COL3A1P02461 AC069542.2-201ENST00000624816 216 ntBASIC7.4□□□□□ -1.22
COL3A1P02461 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC7.4□□□□□ -1.23
COL3A1P02461 PABPC1P6-201ENST00000445594 1829 ntBASIC7.4□□□□□ -1.23
COL3A1P02461 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL3A1P02461 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL3A1P02461 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC7.4□□□□□ -1.23
COL3A1P02461 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.23
COL3A1P02461 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
COL3A1P02461 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
COL3A1P02461 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.39□□□□□ -1.23
COL3A1P02461 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
COL3A1P02461 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC7.39□□□□□ -1.23
COL3A1P02461 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.39□□□□□ -1.23
COL3A1P02461 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.39□□□□□ -1.23
COL3A1P02461 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.39□□□□□ -1.23
COL3A1P02461 AL162456.1-201ENST00000634535 2006 ntBASIC7.39□□□□□ -1.23
COL3A1P02461 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
COL3A1P02461 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.39□□□□□ -1.23
COL3A1P02461 AL590399.2-201ENST00000427536 309 ntBASIC7.39□□□□□ -1.23
COL3A1P02461 CFL1P1-202ENST00000432948 411 ntBASIC7.39□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms