Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC092332.1-201ENST00000563684 829 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
LMX1BO60663 AC234775.3-201ENST00000564612 656 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC008555.7-201ENST00000605008 583 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 GMCL1P2-201ENST00000605230 823 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC092944.2-201ENST00000605443 889 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC141002.1-201ENST00000607025 279 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.3□□□□□ -1.56
LMX1BO60663 AL512506.1-201ENST00000613918 449 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 BNIP3P41-202ENST00000616656 861 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 AC021422.1-201ENST00000621212 473 ntBASIC5.3□□□□□ -1.56
LMX1BO60663 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.3□□□□□ -1.56
LMX1BO60663 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.3□□□□□ -1.56
LMX1BO60663 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.3□□□□□ -1.56
LMX1BO60663 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LMX1BO60663 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LMX1BO60663 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
LMX1BO60663 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
LMX1BO60663 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
LMX1BO60663 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
LMX1BO60663 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
LMX1BO60663 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LMX1BO60663 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
LMX1BO60663 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LMX1BO60663 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 AC119674.1-202ENST00000641333 1860 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 FUNDC2P3-201ENST00000334716 533 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 SNORA17A-201ENST00000391185 133 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 RN7SKP229-201ENST00000410465 302 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 PTCD2P2-201ENST00000415579 1095 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC066692.1-201ENST00000421721 457 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 RPS3AP38-201ENST00000435889 763 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 ATP5LP2-201ENST00000440646 311 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 RAB28P2-201ENST00000454299 641 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 snoU13.29-201ENST00000459370 104 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 RN7SL174P-201ENST00000475578 289 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC074386.1-201ENST00000476560 767 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC093719.1-201ENST00000480427 441 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 RNU6-415P-201ENST00000516252 97 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LMX1BO60663 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 MTND5P21-201ENST00000531961 522 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 AC009712.1-201ENST00000564938 316 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.29□□□□□ -1.56
LMX1BO60663 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.29□□□□□ -1.56
LMX1BO60663 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.29□□□□□ -1.56
LMX1BO60663 uc_338.26-201ENST00000612659 160 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 SNORA17.5-201ENST00000630429 132 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.29□□□□□ -1.56
LMX1BO60663 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
LMX1BO60663 AL161756.3-201ENST00000641216 2071 ntBASIC5.28□□□□□ -1.56
LMX1BO60663 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
LMX1BO60663 MTCO1P11-201ENST00000429111 1528 ntBASIC5.28□□□□□ -1.56
LMX1BO60663 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
LMX1BO60663 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
LMX1BO60663 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
LMX1BO60663 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
LMX1BO60663 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.28□□□□□ -1.56
LMX1BO60663 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms