Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 GAPDHP24-201ENST00000328713 983 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AL158827.1-201ENST00000416300 391 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AL035660.1-201ENST00000422041 222 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC127526.2-201ENST00000426436 775 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC138761.5-201ENST00000433967 325 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 DUTP7-201ENST00000507982 486 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC134669.1-201ENST00000581275 672 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 MIR4260-201ENST00000583107 67 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC009237.13-201ENST00000603193 276 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 FAM27E4-201ENST00000605259 342 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 PWAR1-201ENST00000624188 2414 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 AC140134.1-201ENST00000511830 3544 ntBASIC6.11□□□□□ -1.43
SIX2Q9NPC8 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SIX2Q9NPC8 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AL034546.1-201ENST00000623740 3693 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AC104964.3-201ENST00000606115 2860 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 OR7E156P-201ENST00000400303 464 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 OR7E101P-201ENST00000400428 513 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 CDY8P-201ENST00000428380 1279 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 TPTE2P1-204ENST00000435256 593 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MED28P3-201ENST00000444288 531 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 CDY20P-201ENST00000447528 1279 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 HLA-DPA3-207ENST00000454398 229 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MTATP6P25-201ENST00000574491 261 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 COX6CP7-201ENST00000597056 208 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MIR7109-201ENST00000613748 65 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.1□□□□□ -1.43
SIX2Q9NPC8 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.1□□□□□ -1.43
SIX2Q9NPC8 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 OR7E25P-201ENST00000344844 931 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 RN7SKP187-201ENST00000365536 330 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 RPS6P23-201ENST00000413224 722 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 AK4P4-201ENST00000419465 646 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 NANOGP9-201ENST00000439890 892 ntBASIC6.09□□□□□ -1.43
SIX2Q9NPC8 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SIX2Q9NPC8 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 269.5 ms