Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 RACGAP1P-201ENST00000550663 1879 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC093278.2-201ENST00000564956 2485 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC019178.1-201ENST00000392337 440 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AL121977.1-201ENST00000401636 979 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AL136310.1-201ENST00000404926 654 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 FCF1P5-201ENST00000406490 482 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC092638.1-201ENST00000411966 1275 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 CDC42P6-201ENST00000421246 576 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 HSPE1P16-201ENST00000426640 348 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC091390.2-201ENST00000432573 374 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 HMGB3P6-201ENST00000444896 598 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 PFN1P11-201ENST00000445829 389 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 OR51B8P-201ENST00000449892 769 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC239798.3-201ENST00000454459 408 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 RPS3AP49-201ENST00000472161 790 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AP003385.3-201ENST00000472498 287 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC079080.1-201ENST00000479841 822 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 RN7SL37P-201ENST00000490461 307 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 SNORA3.4-201ENST00000515969 96 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 RNU6-1308P-201ENST00000516817 103 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC007834.2-201ENST00000536310 343 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC116158.1-201ENST00000560231 2129 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC008088.1-201ENST00000580993 280 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC061975.8-201ENST00000587058 721 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AL645933.2-201ENST00000606743 1207 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC010975.3-201ENST00000618727 978 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 BX649567.1-201ENST00000642071 1134 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC010132.4-201ENST00000569883 1368 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 MKI67P1-201ENST00000604297 1460 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 AC034229.2-201ENST00000566945 2508 ntBASIC6.66□□□□□ -1.34
TRIM39Q9HCM9 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 TATDN2P3-201ENST00000452855 3665 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 RNU1-5P-201ENST00000362684 144 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 RNA5SP321-201ENST00000362722 111 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 FDPSP5-201ENST00000399474 1057 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 MIR541-201ENST00000401360 84 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL590635.1-201ENST00000406314 586 ntBASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms