Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.66□□□□□ -1.5
PKNOX1P55347 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PKNOX1P55347 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.65□□□□□ -1.5
PKNOX1P55347 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.65□□□□□ -1.5
PKNOX1P55347 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.65□□□□□ -1.5
PKNOX1P55347 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
PKNOX1P55347 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 RN7SKP184-201ENST00000362348 333 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 RNU1-136P-201ENST00000384181 164 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 RPS27AP6-201ENST00000427962 448 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 RPL5P7-201ENST00000444235 813 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
PKNOX1P55347 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 KF459542.1-201ENST00000450908 553 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 MEMO1P4-201ENST00000453590 386 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 GEMIN2P1-201ENST00000454246 752 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 AL157777.1-201ENST00000468100 304 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 RPL29P23-201ENST00000486188 442 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 MRPS5P3-201ENST00000515577 166 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AC105036.1-201ENST00000566222 271 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 AP005119.1-201ENST00000580956 292 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC5.65□□□□□ -1.5
PKNOX1P55347 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AL353729.2-201ENST00000605859 1249 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 uc_338.31-201ENST00000615595 186 ntBASIC5.65□□□□□ -1.5
PKNOX1P55347 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.65□□□□□ -1.5
PKNOX1P55347 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
PKNOX1P55347 AP004607.3-201ENST00000530354 3915 ntBASIC5.65□□□□□ -1.51
PKNOX1P55347 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
PKNOX1P55347 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
PKNOX1P55347 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.65□□□□□ -1.51
PKNOX1P55347 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
PKNOX1P55347 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.65□□□□□ -1.51
PKNOX1P55347 AC104964.3-201ENST00000606115 2860 ntBASIC5.65□□□□□ -1.51
PKNOX1P55347 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
PKNOX1P55347 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.64□□□□□ -1.51
PKNOX1P55347 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
PKNOX1P55347 QRSL1P1-201ENST00000400977 1540 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 SNORA5.1-201ENST00000384275 131 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 U3.23-201ENST00000391132 200 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.64□□□□□ -1.51
PKNOX1P55347 AC019205.1-201ENST00000421830 730 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.64□□□□□ -1.51
PKNOX1P55347 DEFA9P-201ENST00000433042 285 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 TUBB4BP6-201ENST00000437576 479 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC023271.1-201ENST00000445936 1090 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC005077.1-201ENST00000449226 375 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC114982.2-201ENST00000461396 358 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC099521.1-201ENST00000482557 334 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.64□□□□□ -1.51
PKNOX1P55347 BCAS2P1-201ENST00000528022 632 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.64□□□□□ -1.51
PKNOX1P55347 OR4A41P-201ENST00000533053 928 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.64□□□□□ -1.51
PKNOX1P55347 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.64□□□□□ -1.51
PKNOX1P55347 AC091078.2-201ENST00000557145 559 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.64□□□□□ -1.51
PKNOX1P55347 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
PKNOX1P55347 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 uc_338.29-201ENST00000615099 168 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.64□□□□□ -1.51
PKNOX1P55347 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.64□□□□□ -1.51
PKNOX1P55347 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
PKNOX1P55347 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
PKNOX1P55347 OR4G1P-202ENST00000641173 1788 ntBASIC5.64□□□□□ -1.51
PKNOX1P55347 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PKNOX1P55347 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.63□□□□□ -1.51
PKNOX1P55347 AP001284.1-201ENST00000528393 2118 ntBASIC5.63□□□□□ -1.51
PKNOX1P55347 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.63□□□□□ -1.51
PKNOX1P55347 AP001029.2-203ENST00000589795 4910 ntBASIC5.63□□□□□ -1.51
PKNOX1P55347 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms