Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
COL18A1P39060 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 SNORA17.1-201ENST00000362945 126 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC7.32□□□□□ -1.24
COL18A1P39060 RPL26P29-201ENST00000415623 438 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.32□□□□□ -1.24
COL18A1P39060 RHOT1P3-201ENST00000436571 331 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 RPS11P7-201ENST00000442125 465 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 AC092324.1-201ENST00000468671 324 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 RN7SKP253-201ENST00000516424 309 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 RN7SKP98-201ENST00000517070 156 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 AC006115.2-201ENST00000596823 202 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 AC104785.1-201ENST00000603220 588 ntBASIC7.32□□□□□ -1.24
COL18A1P39060 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.32□□□□□ -1.24
COL18A1P39060 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
COL18A1P39060 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.32□□□□□ -1.24
COL18A1P39060 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
COL18A1P39060 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL18A1P39060 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL18A1P39060 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC7.31□□□□□ -1.24
COL18A1P39060 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL18A1P39060 RN7SKP279-201ENST00000411383 298 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.31□□□□□ -1.24
COL18A1P39060 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 AC073410.1-201ENST00000435125 589 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 NANOGP9-201ENST00000439890 892 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.31□□□□□ -1.24
COL18A1P39060 AC095055.1-201ENST00000603472 1113 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
COL18A1P39060 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 ZNF733P-202ENST00000444809 1573 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 MALAT1-202ENST00000534336 8708 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
COL18A1P39060 DPY19L2P2-203ENST00000435536 1858 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 AP004607.3-201ENST00000530354 3915 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL18A1P39060 GAPDHP25-201ENST00000447061 1001 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 OSTCP1-201ENST00000455507 450 ntBASIC7.31□□□□□ -1.24
COL18A1P39060 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC7.31□□□□□ -1.24
COL18A1P39060 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 AC026951.1-201ENST00000559530 2459 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC7.3□□□□□ -1.24
COL18A1P39060 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.3□□□□□ -1.24
COL18A1P39060 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
COL18A1P39060 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
COL18A1P39060 FAR2P2-201ENST00000413041 594 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 EI24P4-201ENST00000423683 1078 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 FAR2P4-202ENST00000425399 584 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.3□□□□□ -1.24
COL18A1P39060 AZGP1P2-201ENST00000454506 345 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC7.3□□□□□ -1.24
COL18A1P39060 AC078899.1-201ENST00000521432 1185 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.3□□□□□ -1.24
COL18A1P39060 GSTP1P1-201ENST00000548078 319 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 NOP10-202ENST00000557912 436 ntTSL 2 BASIC7.3□□□□□ -1.24
COL18A1P39060 MIR4330-201ENST00000579077 105 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 NANOGP3-201ENST00000605855 286 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 OLMALINC-203ENST00000641087 3779 ntBASIC7.3□□□□□ -1.24
COL18A1P39060 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL18A1P39060 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL18A1P39060 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL18A1P39060 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL18A1P39060 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
COL18A1P39060 AC002090.1-201ENST00000625000 2138 ntBASIC7.29□□□□□ -1.24
COL18A1P39060 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.29□□□□□ -1.24
COL18A1P39060 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
COL18A1P39060 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.29□□□□□ -1.24
COL18A1P39060 RNA5SP487-201ENST00000410186 122 ntBASIC7.29□□□□□ -1.24
COL18A1P39060 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms