Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 ZAN-206ENST00000618565 8651 ntAPPRIS P4 TSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 EMC1-207ENST00000477853 6664 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 ZNF471-202ENST00000591537 5859 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 ABHD18-201ENST00000388795 5450 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.67□□□□□ -1.5
COL6A3P12111 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 HMGB1P40-201ENST00000525121 540 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.67□□□□□ -1.5
COL6A3P12111 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 FBN2-204ENST00000508053 11132 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 AC092821.3-202ENST00000641304 2767 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 CHEK2P3-201ENST00000416118 248 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 RPL12P34-201ENST00000424532 479 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 CCDC11P1-201ENST00000503137 1162 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.67□□□□□ -1.5
COL6A3P12111 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 AP000619.2-201ENST00000546014 969 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 UGT2B25P-201ENST00000511504 1586 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 AC017104.4-201ENST00000636283 1592 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 ZSCAN29-202ENST00000396976 5595 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 CACNA1E-205ENST00000367570 9724 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A3P12111 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 MYOM1-201ENST00000261606 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 LDHAP2-201ENST00000437325 985 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 RPL34P20-201ENST00000442771 351 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 OR52A4P-201ENST00000472867 958 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A3P12111 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
COL6A3P12111 KANSL3-206ENST00000431828 5153 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 AL137100.1-201ENST00000556703 1620 ntBASIC5.67□□□□□ -1.5
COL6A3P12111 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A3P12111 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A3P12111 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 AC132825.3-201ENST00000562182 4710 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC5.66□□□□□ -1.5
COL6A3P12111 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 NNT-AS1-204ENST00000513560 4769 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 AL049697.2-201ENST00000403708 294 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A3P12111 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A3P12111 ACA64.4-201ENST00000459070 127 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A3P12111 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.66□□□□□ -1.5
COL6A3P12111 AC060766.1-201ENST00000590824 627 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 ZNF556-201ENST00000307635 6574 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 PAX6-231ENST00000606377 6901 ntAPPRIS P4 TSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC5.66□□□□□ -1.5
COL6A3P12111 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A3P12111 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A3P12111 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.66□□□□□ -1.5
COL6A3P12111 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.66□□□□□ -1.5
COL6A3P12111 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.66□□□□□ -1.5
COL6A3P12111 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 AC090220.1-201ENST00000593078 1699 ntBASIC5.66□□□□□ -1.5
COL6A3P12111 FAM83F-201ENST00000333407 15561 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A3P12111 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms