Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AL589674.2-201ENST00000604304 337 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AP005131.7-201ENST00000610087 611 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MIR6085-201ENST00000618314 110 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC091948.2-201ENST00000636510 279 ntBASIC6.02□□□□□ -1.45
COL28A1Q2UY09 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.02□□□□□ -1.45
COL28A1Q2UY09 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 RPL31P11-201ENST00000426558 1558 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC023245.2-201ENST00000530760 2978 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 RNU6-386P-201ENST00000362650 107 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 CFL1P4-201ENST00000451536 498 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL445665.1-202ENST00000452436 324 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC104997.1-201ENST00000519761 717 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC026688.1-201ENST00000520639 1168 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 RN7SL208P-201ENST00000577964 296 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 BUB1P1-201ENST00000603541 607 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL157899.1-201ENST00000604110 936 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC024940.4-201ENST00000605507 246 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC025171.4-201ENST00000607250 1047 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC015802.5-201ENST00000607478 399 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC037198.3-201ENST00000616754 526 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 CASC19-222ENST00000641321 1173 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC025809.2-201ENST00000625085 1802 ntBASIC6.01□□□□□ -1.45
COL28A1Q2UY09 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
COL28A1Q2UY09 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
COL28A1Q2UY09 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL28A1Q2UY09 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
COL28A1Q2UY09 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6□□□□□ -1.45
COL28A1Q2UY09 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL28A1Q2UY09 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6□□□□□ -1.45
COL28A1Q2UY09 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 AL359092.1-201ENST00000417156 265 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 RCC2P2-201ENST00000422174 918 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC106901.1-201ENST00000425086 698 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6□□□□□ -1.45
COL28A1Q2UY09 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 AC012497.1-201ENST00000429392 575 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 C1DP3-201ENST00000455013 423 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 RN7SL165P-201ENST00000477476 291 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 SNORA58-201ENST00000505219 137 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC6□□□□□ -1.45
COL28A1Q2UY09 SCARNA5-201ENST00000516201 276 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC027026.1-201ENST00000532323 742 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 RPA2P1-201ENST00000556557 721 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 1763 ms