Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC027279.4-201ENST00000624371 2072 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 RACGAP1P-201ENST00000550663 1879 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 MFSD8-217ENST00000641178 4374 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 AL096816.1-201ENST00000623300 2920 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 AL451064.2-201ENST00000623514 1654 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 DYNC1I2P1-201ENST00000435916 1838 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 UBBP1-201ENST00000392399 473 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC121334.1-201ENST00000396414 802 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AL096711.1-201ENST00000404780 554 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 RNA5SP155-201ENST00000411154 129 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC092638.1-201ENST00000411966 1275 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.32□□□□□ -1.24
SOX4Q06945 AL049610.1-201ENST00000423374 372 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 GTF2IP2-201ENST00000424290 697 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC012519.1-201ENST00000424588 610 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 CENPIP1-201ENST00000425713 902 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC7.32□□□□□ -1.24
SOX4Q06945 AL139415.2-201ENST00000431968 163 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 BX119917.1-201ENST00000432517 502 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 SUMO2P8-201ENST00000434672 286 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 AL031681.1-201ENST00000443304 400 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 PFN1P11-201ENST00000445829 389 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 CASP3P1-201ENST00000446037 609 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC092045.1-201ENST00000495716 1231 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC008885.2-201ENST00000509506 930 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC7.32□□□□□ -1.24
SOX4Q06945 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC7.32□□□□□ -1.24
SOX4Q06945 SNRPCP6-201ENST00000528310 210 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 SERPINE4P-201ENST00000554978 281 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC087465.1-201ENST00000560574 245 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.32□□□□□ -1.24
SOX4Q06945 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 NDUFA5P11-201ENST00000567995 343 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC074051.3-201ENST00000570238 358 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 MIR3157-201ENST00000578688 85 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 MIR548S-201ENST00000581352 82 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.32□□□□□ -1.24
SOX4Q06945 VN1R82P-201ENST00000601481 356 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC073333.2-201ENST00000603589 769 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AC073137.1-201ENST00000605636 634 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 AL162574.1-201ENST00000615702 950 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC009878.1-201ENST00000621819 340 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 MIR6823-201ENST00000622118 61 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC099654.10-201ENST00000640395 161 ntBASIC7.32□□□□□ -1.24
SOX4Q06945 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC7.32□□□□□ -1.24
SOX4Q06945 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SOX4Q06945 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.32□□□□□ -1.24
SOX4Q06945 AC018765.1-201ENST00000623357 3446 ntBASIC7.31□□□□□ -1.24
SOX4Q06945 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SOX4Q06945 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SOX4Q06945 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SOX4Q06945 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.31□□□□□ -1.24
SOX4Q06945 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SOX4Q06945 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC7.31□□□□□ -1.24
SOX4Q06945 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms