Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HNF4AP41235 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HNF4AP41235 RNU6-249P-201ENST00000363016 102 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 SNORD1C-201ENST00000363315 78 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 RNU105B-201ENST00000364478 208 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 GCNT1P4-201ENST00000404096 329 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 RNA5SP156-201ENST00000410250 110 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 RN7SKP166-201ENST00000410812 305 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 RNU2-18P-201ENST00000411224 162 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AL035422.1-201ENST00000414193 397 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.89□□□□□ -1.47
HNF4AP41235 AL590004.3-202ENST00000445883 451 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 FCF1P7-201ENST00000451185 558 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 snoU13.29-201ENST00000459370 104 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 OR11I1P-201ENST00000486033 954 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC036111.2-201ENST00000533247 901 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 OR1E3-201ENST00000575608 948 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 MIR132-201ENST00000591554 101 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
HNF4AP41235 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.89□□□□□ -1.47
HNF4AP41235 SMIM12P1-201ENST00000603004 274 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AC079791.1-201ENST00000605356 973 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AC092681.3-201ENST00000609463 678 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 AC243960.7-201ENST00000623532 707 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AL683826.1-201ENST00000624104 627 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 AC111152.1-202ENST00000635848 339 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.89□□□□□ -1.47
HNF4AP41235 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
HNF4AP41235 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HNF4AP41235 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.88□□□□□ -1.47
HNF4AP41235 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.88□□□□□ -1.47
HNF4AP41235 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 RBBP4P5-201ENST00000398583 1266 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 MIR1275-201ENST00000408770 80 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 RPS15AP30-201ENST00000420976 390 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 RCC2P2-201ENST00000422174 918 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 AL365220.1-201ENST00000432923 399 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 AL162739.1-201ENST00000450606 307 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC090058.1-201ENST00000498788 435 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.88□□□□□ -1.47
HNF4AP41235 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 AC021269.1-201ENST00000526860 705 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.88□□□□□ -1.47
HNF4AP41235 MIR4502-201ENST00000580432 81 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC073333.2-201ENST00000603589 769 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.88□□□□□ -1.47
HNF4AP41235 AC069234.4-201ENST00000621276 412 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.88□□□□□ -1.47
HNF4AP41235 AL357140.4-201ENST00000636827 412 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
HNF4AP41235 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HNF4AP41235 AC020656.2-201ENST00000613291 5309 ntBASIC5.88□□□□□ -1.47
HNF4AP41235 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms