Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR378C-201ENST00000578683 81 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC011824.1-201ENST00000584863 561 ntTSL 4 BASIC5.68□□□□□ -1.5
HOXA3O43365 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC036176.3-201ENST00000602456 418 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AP001981.2-201ENST00000603241 418 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AL356986.1-201ENST00000604085 341 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC010738.1-201ENST00000604970 987 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AC011374.2-201ENST00000607135 526 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 RDM1-219ENST00000615378 542 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC006338.2-201ENST00000616864 791 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AP004607.9-201ENST00000618202 316 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AK6-205ENST00000618980 483 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXA3O43365 AL359715.5-201ENST00000623431 443 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AL049541.2-201ENST00000626377 555 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HOXA3O43365 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 CCDC150P1-201ENST00000537123 2215 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 LCOR-201ENST00000286067 4542 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 AC241584.2-201ENST00000637142 2090 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HOXA3O43365 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC5.68□□□□□ -1.5
HOXA3O43365 AC006600.2-201ENST00000624834 2506 ntBASIC5.68□□□□□ -1.5
HOXA3O43365 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXA3O43365 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXA3O43365 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 UGT2B25P-201ENST00000511504 1586 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 MFSD8-217ENST00000641178 4374 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 AL390237.1-201ENST00000404226 1415 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HOXA3O43365 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 RNU6-553P-201ENST00000364047 96 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 FAM204BP-201ENST00000369171 701 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 Y_RNA.465-201ENST00000384293 102 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 MIR191-201ENST00000384873 92 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 GGA1-205ENST00000405147 575 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXA3O43365 AL033519.1-201ENST00000407266 307 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC006509.1-201ENST00000420788 634 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC019178.2-201ENST00000423595 505 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXA3O43365 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 AC007365.2-201ENST00000428806 458 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 IFNNP1-201ENST00000429219 553 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 HMGB1P48-201ENST00000446155 598 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 OR52J1P-201ENST00000450596 932 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC026348.1-201ENST00000462549 1053 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC026336.1-201ENST00000466577 351 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 RPL35AP19-201ENST00000469425 329 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 RN7SL836P-201ENST00000476140 296 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC084024.2-201ENST00000503480 791 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms