Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC015689.2-201ENST00000528172 1738 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 AC009135.2-201ENST00000624136 1768 ntBASIC5.87□□□□□ -1.47
LHX3Q9UBR4 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LHX3Q9UBR4 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL159987.1-201ENST00000347911 293 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 EEF1B2P8-201ENST00000414101 671 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC019205.1-201ENST00000421830 730 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL389925.1-201ENST00000432257 728 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 VN1R96P-201ENST00000446052 858 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 RNU1-88P-201ENST00000459274 128 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 RPL32P33-201ENST00000487023 394 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC096996.1-201ENST00000563813 325 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC015849.6-201ENST00000605454 474 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 RN7SL544P-201ENST00000617232 284 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 RN7SL763P-201ENST00000620922 284 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AP004607.3-201ENST00000530354 3915 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 TET1P1-201ENST00000426627 2301 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 IMMTP1-201ENST00000435590 2219 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LHX3Q9UBR4 AL161901.1-201ENST00000624954 3425 ntBASIC5.86□□□□□ -1.47
LHX3Q9UBR4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 RNF19BPY-201ENST00000458209 1550 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 RNA5SP394-201ENST00000364216 119 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AL031985.1-201ENST00000392713 418 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 HMGB1P20-201ENST00000402555 677 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC093155.2-201ENST00000420734 937 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC092651.1-201ENST00000426110 312 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 HMGB3P24-201ENST00000433260 622 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 FRG2FP-204ENST00000453982 852 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC079080.1-201ENST00000479841 822 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 SCARNA6.1-201ENST00000516989 238 ntBASIC5.85□□□□□ -1.47
LHX3Q9UBR4 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.85□□□□□ -1.47
LHX3Q9UBR4 MIR4260-201ENST00000583107 67 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms