Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NDUFS5P5-201ENST00000437256 321 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC009237.1-201ENST00000442127 744 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AL161722.1-201ENST00000446972 1032 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AL445466.1-201ENST00000448432 357 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 RPS27AP2-201ENST00000457576 465 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 RPS26P39-201ENST00000469206 341 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 IGKV2-19-201ENST00000518132 283 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 MIR4489-201ENST00000578869 62 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 RNU4ATAC-201ENST00000580972 127 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 OR7E18P-201ENST00000592589 702 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC096586.2-201ENST00000610260 441 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 MIR6809-201ENST00000612189 116 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 MIR6798-201ENST00000612887 67 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AL354950.1-201ENST00000614150 568 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AC096861.1-201ENST00000616652 240 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 MIR6730-201ENST00000622213 67 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 AL357562.1-201ENST00000624911 609 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 DDX18P6-201ENST00000450119 1997 ntBASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HDDC3Q8N4P3 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 WDR95P-201ENST00000425638 1542 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 CR382285.2-201ENST00000624662 1495 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC079753.1-201ENST00000623243 3868 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 MIR105-2-201ENST00000385083 81 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AL096711.1-201ENST00000404780 554 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AL391361.1-201ENST00000405580 489 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 MIR1203-201ENST00000408812 85 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC245060.4-201ENST00000413293 1121 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 RPS15AP30-201ENST00000420976 390 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC245884.2-201ENST00000426257 404 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AL590399.4-201ENST00000436561 601 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 OR13K1P-201ENST00000444577 975 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC016027.4-201ENST00000450866 277 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 UBFD1P1-201ENST00000473259 814 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 TRBV8-1-201ENST00000481590 279 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 OR56A7P-201ENST00000524865 941 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC234775.3-201ENST00000564612 656 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 COX6CP7-201ENST00000597056 208 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 AL021707.7-201ENST00000607991 416 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 RNA5SP440-201ENST00000612665 119 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 RFC1-217ENST00000639695 867 ntTSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 GNL2P1-201ENST00000451274 2190 ntBASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.1□□□□□ -1.43
HDDC3Q8N4P3 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC011815.2-201ENST00000618230 2021 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 NEPNP-201ENST00000404786 1371 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 HDAC1P2-201ENST00000453661 1398 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL442128.2-201ENST00000620246 1824 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms