Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC119403.2-201ENST00000590960 598 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC010503.3-201ENST00000594355 540 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC068768.2-201ENST00000602352 343 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL512356.3-201ENST00000623005 461 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC073488.3-201ENST00000631611 778 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 BCORP1-203ENST00000513194 5093 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL591135.1-201ENST00000401578 5914 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC006484.1-201ENST00000435086 1884 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC005005.4-201ENST00000623789 16698 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 SNORA77.2-201ENST00000408571 112 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC099535.1-201ENST00000408928 371 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 BX276092.6-201ENST00000430476 250 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AL365220.1-201ENST00000432923 399 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 RPSAP40-201ENST00000442343 891 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 RPL6P30-201ENST00000443382 862 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 BX276092.8-201ENST00000455722 250 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC019084.1-201ENST00000457337 432 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC009963.3-201ENST00000458090 486 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 RN7SL168P-201ENST00000463821 279 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC098847.1-201ENST00000473094 348 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 RN7SL741P-201ENST00000482473 289 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC083795.1-201ENST00000491760 320 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 IGKV3D-25-201ENST00000519599 235 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC024405.1-201ENST00000532521 1042 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC006512.2-201ENST00000543250 486 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC026826.3-201ENST00000561747 158 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC009852.2-201ENST00000567898 485 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC006363.1-201ENST00000603806 463 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 MIR7109-201ENST00000613748 65 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC004801.6-201ENST00000616571 978 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC138965.3-201ENST00000623875 498 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 AC073592.6-201ENST00000624271 415 ntBASIC5.29□□□□□ -1.56
SKA3Q8IX90 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.29□□□□□ -1.56
SKA3Q8IX90 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.29□□□□□ -1.56
SKA3Q8IX90 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC005261.2-201ENST00000593427 4258 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC008627.1-201ENST00000517511 1704 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 PSG10P-201ENST00000501199 1500 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms