Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.58□□□□□ -1.36
USP39Q53GS9 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
USP39Q53GS9 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC008549.2-201ENST00000333482 706 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
USP39Q53GS9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 RPL12P16-201ENST00000431098 498 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AL645936.1-201ENST00000441979 518 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 HMGN1P8-201ENST00000463578 288 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC078857.1-201ENST00000469870 667 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC023818.1-201ENST00000498379 384 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC104109.1-201ENST00000498563 436 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC131392.1-201ENST00000506490 633 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 SNORA70.17-201ENST00000516449 133 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 IGKV3D-34-201ENST00000522638 302 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AP000662.1-201ENST00000530952 487 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 AL442163.2-201ENST00000553912 710 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC145350.1-201ENST00000567426 208 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC023824.3-201ENST00000569003 562 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC090826.1-203ENST00000569235 490 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC068620.3-201ENST00000602749 560 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 SNORA74.4-201ENST00000607595 199 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC010333.3-201ENST00000615100 402 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AP003400.2-201ENST00000624036 666 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 AC073488.6-201ENST00000632293 754 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 MIR4302-201ENST00000638058 60 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
USP39Q53GS9 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 AL136531.3-201ENST00000624378 3658 ntBASIC6.57□□□□□ -1.36
USP39Q53GS9 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
USP39Q53GS9 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.57□□□□□ -1.36
USP39Q53GS9 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
USP39Q53GS9 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.57□□□□□ -1.36
USP39Q53GS9 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 NF1-214ENST00000490416 1329 ntTSL 3 BASIC6.56□□□□□ -1.36
USP39Q53GS9 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC096992.2-201ENST00000609553 1684 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
USP39Q53GS9 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.56□□□□□ -1.36
USP39Q53GS9 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AL031779.1-201ENST00000415663 330 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC007064.3-201ENST00000422608 359 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 EMC3-AS1-205ENST00000438698 534 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 CRYGGP-201ENST00000443337 145 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms