Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXF1Q12946 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXF1Q12946 snoU109.5-201ENST00000516231 132 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXF1Q12946 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXF1Q12946 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXF1Q12946 COX6CP7-201ENST00000597056 208 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 RPL12P48-201ENST00000605620 304 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 MIR1910-201ENST00000636955 80 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXF1Q12946 AP001153.1-201ENST00000641024 338 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXF1Q12946 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXF1Q12946 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.28□□□□□ -1.56
FOXF1Q12946 AC239868.2-201ENST00000564237 4527 ntBASIC5.28□□□□□ -1.56
FOXF1Q12946 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXF1Q12946 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXF1Q12946 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXF1Q12946 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
FOXF1Q12946 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.28□□□□□ -1.56
FOXF1Q12946 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 MSL3P1-202ENST00000440028 1468 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
FOXF1Q12946 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 AL359955.1-201ENST00000455242 3275 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 RN7SKP78-201ENST00000364711 318 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 OOSP1-201ENST00000398992 1270 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AL357752.1-201ENST00000412817 349 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXF1Q12946 RPS3P2-201ENST00000421346 701 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AL035660.1-201ENST00000422041 222 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXF1Q12946 CDY8P-201ENST00000428380 1279 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AC002069.1-201ENST00000429649 1159 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXF1Q12946 CDY20P-201ENST00000447528 1279 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AC105384.2-201ENST00000508433 640 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AC078899.1-201ENST00000521432 1185 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXF1Q12946 HMGN2P36-201ENST00000529541 409 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.27□□□□□ -1.57
FOXF1Q12946 ZNF322P1-201ENST00000568013 1209 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.27□□□□□ -1.57
FOXF1Q12946 AL049840.6-201ENST00000604583 345 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AL365181.4-201ENST00000609800 547 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AC022400.9-201ENST00000623633 273 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.27□□□□□ -1.57
FOXF1Q12946 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 OR8G3P-202ENST00000641572 1255 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 AC087516.1-201ENST00000561236 2428 ntBASIC5.27□□□□□ -1.57
FOXF1Q12946 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
FOXF1Q12946 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.27□□□□□ -1.57
FOXF1Q12946 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.26□□□□□ -1.57
FOXF1Q12946 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 HMGN1P20-201ENST00000411849 300 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AL512637.1-201ENST00000439523 1231 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 REG1CP-206ENST00000447469 496 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXF1Q12946 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 RNA5SP271-201ENST00000516700 88 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AL121594.2-201ENST00000541658 472 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.26□□□□□ -1.57
FOXF1Q12946 NPM1P42-201ENST00000560329 862 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.26□□□□□ -1.57
FOXF1Q12946 NDUFA5P11-201ENST00000567995 343 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXF1Q12946 AC006115.2-201ENST00000596823 202 ntBASIC5.26□□□□□ -1.57
FOXF1Q12946 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms