Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR6889-201ENST00000613185 59 ntBASIC7.34□□□□□ -1.23
SOX4Q06945 AC010333.3-201ENST00000615100 402 ntBASIC7.34□□□□□ -1.23
SOX4Q06945 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC7.34□□□□□ -1.23
SOX4Q06945 AC005514.1-201ENST00000623521 208 ntBASIC7.34□□□□□ -1.23
SOX4Q06945 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.34□□□□□ -1.23
SOX4Q06945 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 AL359715.3-201ENST00000569267 2123 ntBASIC7.34□□□□□ -1.23
SOX4Q06945 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC7.34□□□□□ -1.23
SOX4Q06945 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
SOX4Q06945 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC7.34□□□□□ -1.23
SOX4Q06945 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
SOX4Q06945 AL023806.3-201ENST00000638502 2704 ntBASIC7.34□□□□□ -1.23
SOX4Q06945 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.24
SOX4Q06945 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC7.34□□□□□ -1.24
SOX4Q06945 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.34□□□□□ -1.24
SOX4Q06945 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.24
SOX4Q06945 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.34□□□□□ -1.24
SOX4Q06945 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.34□□□□□ -1.24
SOX4Q06945 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC7.33□□□□□ -1.24
SOX4Q06945 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 AC104837.1-201ENST00000444644 1587 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL359922.2-201ENST00000581788 3017 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC007012.2-201ENST00000623206 1676 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
SOX4Q06945 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
SOX4Q06945 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 SNORD56.4-201ENST00000363883 71 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 SNORA70.3-201ENST00000365075 132 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 SNORD116.1-201ENST00000365628 92 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC7.33□□□□□ -1.24
SOX4Q06945 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 AL161449.1-201ENST00000414531 1199 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC7.33□□□□□ -1.24
SOX4Q06945 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.33□□□□□ -1.24
SOX4Q06945 GLUD1P9-201ENST00000420997 1173 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AC004074.1-201ENST00000421810 1063 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 HIGD1AP12-201ENST00000427832 281 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 RPS10P21-201ENST00000430654 475 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 OFD1P13Y-201ENST00000431179 1232 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 OR6R1P-201ENST00000431838 940 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 MTND1P32-201ENST00000433043 938 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AC013410.1-201ENST00000436223 1232 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 MRPL35P2-201ENST00000448009 511 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 AL096803.2-201ENST00000450032 677 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC011825.1-201ENST00000484967 388 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 PABPC1P1-201ENST00000506347 591 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 RNU6-943P-201ENST00000516960 98 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 OR9G2P-201ENST00000533326 880 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC7.33□□□□□ -1.24
SOX4Q06945 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
SOX4Q06945 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC012417.1-201ENST00000582307 1039 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC079089.3-201ENST00000603094 673 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL109618.2-201ENST00000605527 211 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AP002360.3-201ENST00000607673 710 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL008582.1-201ENST00000609612 442 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 AC007603.3-201ENST00000636915 979 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 AL596275.2-207ENST00000641188 675 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
SOX4Q06945 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC7.33□□□□□ -1.24
SOX4Q06945 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
SOX4Q06945 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC7.33□□□□□ -1.24
SOX4Q06945 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC7.33□□□□□ -1.24
SOX4Q06945 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 AL133268.1-201ENST00000405676 1401 ntBASIC7.33□□□□□ -1.24
SOX4Q06945 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SOX4Q06945 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms