Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 AC005034.3-201ENST00000604845 1747 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 UGT2B27P-201ENST00000505092 1620 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HSPG2P98160 RNU1-146P-201ENST00000364015 165 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AL359837.1-201ENST00000381357 287 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AL451062.2-201ENST00000427515 271 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 EIF3KP3-201ENST00000514461 639 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC073581.1-201ENST00000519036 575 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 DPPA3P2-202ENST00000557188 1219 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 AC091932.2-201ENST00000623014 291 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 AC130304.1-201ENST00000622942 2385 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 UTY-203ENST00000362096 4990 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 PWAR1-201ENST00000624188 2414 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 RBM27-201ENST00000265271 6451 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 RPSAP35-201ENST00000413753 818 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.4□□□□□ -1.86
HSPG2P98160 MIR4311-201ENST00000580794 100 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 MLECP1-201ENST00000615893 709 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 MIR6830-201ENST00000636015 70 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 STRN-201ENST00000263918 8168 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 ZC3H6-201ENST00000343936 11539 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
HSPG2P98160 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 COL11A1-202ENST00000358392 7327 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HSPG2P98160 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 SNORA57.1-201ENST00000391227 145 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 MIR541-201ENST00000401360 84 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 AC007559.1-201ENST00000428736 355 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC3.4□□□□□ -1.86
HSPG2P98160 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC3.4□□□□□ -1.86
HSPG2P98160 AC105384.2-201ENST00000508433 640 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 HMGB1P44-201ENST00000508597 572 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 AC021678.3-201ENST00000517893 476 ntBASIC3.4□□□□□ -1.86
HSPG2P98160 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC3.4□□□□□ -1.86
HSPG2P98160 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC3.4□□□□□ -1.86
HSPG2P98160 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.4□□□□□ -1.86
HSPG2P98160 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
HSPG2P98160 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 MYO15A-201ENST00000205890 11863 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 BACH2-210ENST00000537989 9108 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 GPR161-208ENST00000537209 8256 ntTSL 2 BASIC3.4□□□□□ -1.87
HSPG2P98160 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 AL391261.1-201ENST00000555712 1479 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 AL034546.1-201ENST00000623740 3693 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 MYO5B-201ENST00000285039 9505 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
HSPG2P98160 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
HSPG2P98160 RNA5SP332-201ENST00000391063 115 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 snoU13.22-201ENST00000459428 104 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 COX6B1P5-201ENST00000509843 249 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.4□□□□□ -1.87
HSPG2P98160 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC3.4□□□□□ -1.87
HSPG2P98160 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
HSPG2P98160 AC068870.1-201ENST00000563737 2455 ntBASIC3.4□□□□□ -1.87
HSPG2P98160 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC3.4□□□□□ -1.87
HSPG2P98160 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HSPG2P98160 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms