Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CDX1P47902 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.1□□□□□ -1.59
CDX1P47902 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CDX1P47902 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-1320P-201ENST00000390838 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-1269P-201ENST00000391139 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RN7SKP129-201ENST00000410288 299 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RN7SKP221-201ENST00000410420 301 ntBASIC5.1□□□□□ -1.59
CDX1P47902 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 THEM7P-201ENST00000419556 672 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RPL7AP51-201ENST00000422016 760 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 VN1R48P-201ENST00000448149 1036 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-599P-201ENST00000459383 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-1193P-201ENST00000459461 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 RN7SL568P-201ENST00000493069 298 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AL117692.1-201ENST00000494283 713 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RPL19P11-201ENST00000495944 589 ntBASIC5.1□□□□□ -1.59
CDX1P47902 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 AC083906.1-201ENST00000509298 406 ntBASIC5.1□□□□□ -1.59
CDX1P47902 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 SCARNA5-201ENST00000516201 276 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 AC008429.2-201ENST00000523057 864 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 OR52K3P-201ENST00000531655 943 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 AC023968.1-201ENST00000560719 475 ntBASIC5.1□□□□□ -1.59
CDX1P47902 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 LINC00556-201ENST00000569603 412 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 AC010503.3-201ENST00000594355 540 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC5.1□□□□□ -1.59
CDX1P47902 AC004241.3-201ENST00000611728 517 ntBASIC5.1□□□□□ -1.59
CDX1P47902 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-368P-201ENST00000620928 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC012653.2-201ENST00000621880 420 ntBASIC5.1□□□□□ -1.59
CDX1P47902 RNU6-538P-201ENST00000622329 107 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC089999.3-201ENST00000622440 577 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AC138965.3-201ENST00000623875 498 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC5.1□□□□□ -1.59
CDX1P47902 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CDX1P47902 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 AC091948.2-201ENST00000636510 279 ntBASIC5.1□□□□□ -1.59
CDX1P47902 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.1□□□□□ -1.59
CDX1P47902 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 AL359955.1-201ENST00000455242 3275 ntBASIC5.1□□□□□ -1.59
CDX1P47902 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CDX1P47902 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 HSPA8P14-201ENST00000552265 1805 ntBASIC5.09□□□□□ -1.59
CDX1P47902 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 AL603750.1-201ENST00000624216 1717 ntBASIC5.09□□□□□ -1.59
CDX1P47902 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 OR9K1P-202ENST00000641111 3217 ntBASIC5.09□□□□□ -1.59
CDX1P47902 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC5.09□□□□□ -1.59
CDX1P47902 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 AC005702.3-201ENST00000585345 1447 ntBASIC5.09□□□□□ -1.59
CDX1P47902 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.09□□□□□ -1.59
CDX1P47902 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CDX1P47902 AC022613.3-201ENST00000560740 1346 ntBASIC5.09□□□□□ -1.59
CDX1P47902 AC022417.1-201ENST00000624768 1303 ntBASIC5.09□□□□□ -1.59
CDX1P47902 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms