Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RNVU1-6-201ENST00000364688 164 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 MTND4LP17-201ENST00000414607 293 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.86□□□□□ -1.31
SCN4AP35499 AC097721.1-201ENST00000427150 1253 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.86□□□□□ -1.31
SCN4AP35499 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.86□□□□□ -1.31
SCN4AP35499 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.86□□□□□ -1.31
SCN4AP35499 AC092324.1-201ENST00000468671 324 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC6.86□□□□□ -1.31
SCN4AP35499 AC006463.2-201ENST00000473326 348 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.86□□□□□ -1.31
SCN4AP35499 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.86□□□□□ -1.31
SCN4AP35499 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.86□□□□□ -1.31
SCN4AP35499 PCNPP1-201ENST00000552501 511 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 HSPE1P2-201ENST00000554777 306 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 AL683813.2-201ENST00000605245 502 ntBASIC6.86□□□□□ -1.31
SCN4AP35499 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.86□□□□□ -1.31
SCN4AP35499 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.31
SCN4AP35499 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SCN4AP35499 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SCN4AP35499 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
SCN4AP35499 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SCN4AP35499 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SCN4AP35499 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SCN4AP35499 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC6.86□□□□□ -1.31
SCN4AP35499 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 MIR133B-201ENST00000362210 119 ntBASIC6.85□□□□□ -1.31
SCN4AP35499 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 RPS6P23-201ENST00000413224 722 ntBASIC6.85□□□□□ -1.31
SCN4AP35499 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.85□□□□□ -1.31
SCN4AP35499 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 OR4H6P-201ENST00000563771 921 ntBASIC6.85□□□□□ -1.31
SCN4AP35499 AC006116.3-201ENST00000592968 361 ntBASIC6.85□□□□□ -1.31
SCN4AP35499 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.85□□□□□ -1.31
SCN4AP35499 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.85□□□□□ -1.31
SCN4AP35499 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.85□□□□□ -1.31
SCN4AP35499 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.85□□□□□ -1.31
SCN4AP35499 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.85□□□□□ -1.31
SCN4AP35499 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 AL731556.1-201ENST00000394628 3711 ntBASIC6.85□□□□□ -1.31
SCN4AP35499 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SCN4AP35499 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
SCN4AP35499 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 ZNF733P-202ENST00000444809 1573 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 PANDAR-201ENST00000629595 1506 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 DUTP5-201ENST00000406790 469 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
SCN4AP35499 AL360081.1-201ENST00000428299 555 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.84□□□□□ -1.31
SCN4AP35499 RPL23AP40-201ENST00000487630 390 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
SCN4AP35499 AL512310.9-201ENST00000553311 948 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 RPL10P14-201ENST00000565265 298 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 MRPS21P7-201ENST00000566937 238 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 MIR4311-201ENST00000580794 100 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 AC024255.1-201ENST00000614376 102 ntBASIC6.84□□□□□ -1.31
SCN4AP35499 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SCN4AP35499 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
SCN4AP35499 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.84□□□□□ -1.31
SCN4AP35499 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.84□□□□□ -1.31
SCN4AP35499 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
SCN4AP35499 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.32
SCN4AP35499 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
SCN4AP35499 AC105749.1-201ENST00000631338 2008 ntBASIC6.84□□□□□ -1.32
SCN4AP35499 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
SCN4AP35499 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.83□□□□□ -1.32
SCN4AP35499 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.83□□□□□ -1.32
SCN4AP35499 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms