Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 EIF4EP5-201ENST00000528228 640 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXD4P09016 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
HOXD4P09016 AC079791.1-201ENST00000605356 973 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC018690.1-201ENST00000608144 626 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXD4P09016 RFPL4AP6-201ENST00000616792 846 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 AC073488.3-201ENST00000631611 778 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 AC011416.1-201ENST00000514947 1732 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 ADAM24P-201ENST00000398655 2101 ntBASIC5.53□□□□□ -1.52
HOXD4P09016 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
HOXD4P09016 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXD4P09016 AC006213.6-201ENST00000623722 4179 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.52□□□□□ -1.53
HOXD4P09016 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD4P09016 RNA5SP110-201ENST00000362638 115 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 UBE2V1P14-201ENST00000415815 558 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC079355.1-201ENST00000421770 223 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD4P09016 VTI1BP4-201ENST00000427516 527 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD4P09016 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXD4P09016 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 RN7SKP238-201ENST00000516483 249 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 Y_RNA.710-201ENST00000516975 110 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 AP005639.1-201ENST00000526939 192 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 RPA2P3-201ENST00000533268 770 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXD4P09016 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD4P09016 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC073333.2-201ENST00000603589 769 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 AC008555.7-201ENST00000605008 583 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXD4P09016 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXD4P09016 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD4P09016 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 AC018717.1-201ENST00000457712 1505 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.52□□□□□ -1.53
HOXD4P09016 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
HOXD4P09016 AC119674.1-213ENST00000641177 1386 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 AL353763.1-201ENST00000624467 1628 ntBASIC5.52□□□□□ -1.53
HOXD4P09016 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD4P09016 AC006484.1-201ENST00000435086 1884 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 LINC01616-201ENST00000561816 2280 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD4P09016 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD4P09016 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD4P09016 RNA5SP477-201ENST00000362639 119 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AL132875.1-201ENST00000403623 949 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 AL590399.2-201ENST00000427536 309 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD4P09016 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 AC016908.1-201ENST00000442571 1219 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXD4P09016 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD4P09016 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD4P09016 AC016839.1-201ENST00000578162 867 ntBASIC5.51□□□□□ -1.53
HOXD4P09016 AC005244.1-201ENST00000582566 339 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms