Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC3.42□□□□□ -1.86
HSPG2P98160 AL356752.1-201ENST00000615844 593 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 AC232271.1-201ENST00000602455 2715 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 CASC19-205ENST00000641013 1411 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC006206.1-201ENST00000544842 3387 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
HSPG2P98160 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ICA1L-202ENST00000392237 5173 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 ERG-210ENST00000442448 5034 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 MYH2-201ENST00000245503 6339 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 ELOCP19-201ENST00000411919 318 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 AC023141.8-201ENST00000442554 208 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 CCDC11P1-201ENST00000503137 1162 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 IGLV3-24-201ENST00000517477 197 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC109635.6-201ENST00000525487 1113 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC3.42□□□□□ -1.86
HSPG2P98160 MIR4691-201ENST00000583764 85 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.42□□□□□ -1.86
HSPG2P98160 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC3.42□□□□□ -1.86
HSPG2P98160 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
HSPG2P98160 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HSPG2P98160 PPIP5K1-203ENST00000360135 5559 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 PPIP5K1-204ENST00000360301 5565 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 RN7SKP149-201ENST00000363008 344 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 AC096775.1-201ENST00000437724 448 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 KNOP1P3-201ENST00000446933 426 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 RN7SKP147-201ENST00000517154 244 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC3.42□□□□□ -1.86
HSPG2P98160 AP006289.1-201ENST00000538089 277 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 MIR4284-201ENST00000578924 81 ntBASIC3.42□□□□□ -1.86
HSPG2P98160 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC3.42□□□□□ -1.86
HSPG2P98160 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 TNPO1P2-201ENST00000426249 2665 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 PRICKLE2-AS1-201ENST00000482609 6505 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 U3.22-201ENST00000391120 215 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 RNA5SP113-201ENST00000410486 84 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC069213.2-201ENST00000420238 366 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC3.41□□□□□ -1.86
HSPG2P98160 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 AC005000.1-201ENST00000536192 288 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 RN7SL690P-201ENST00000582087 240 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC015818.6-201ENST00000584274 634 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC012254.5-201ENST00000623573 478 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 HERC2P2-205ENST00000619021 5746 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 PTPRB-204ENST00000538708 5839 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 TTL-201ENST00000233336 14269 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.41□□□□□ -1.86
HSPG2P98160 GJA6P-201ENST00000415117 1042 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 AC091167.1-201ENST00000492017 396 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 AC244502.2-201ENST00000543361 851 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.41□□□□□ -1.86
HSPG2P98160 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.41□□□□□ -1.86
HSPG2P98160 AC106730.2-201ENST00000566641 540 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 AC067959.1-201ENST00000604334 379 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 ASNSP1-204ENST00000641977 1664 ntBASIC3.41□□□□□ -1.86
HSPG2P98160 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HSPG2P98160 MTMR10-201ENST00000435680 4961 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms