Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA3P55318 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA3P55318 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA3P55318 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC4.33□□□□□ -1.72
FOXA3P55318 AL138693.1-201ENST00000622219 129 ntBASIC4.33□□□□□ -1.72
FOXA3P55318 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA3P55318 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
FOXA3P55318 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
FOXA3P55318 USP40-202ENST00000409945 1946 ntTSL 2 BASIC4.33□□□□□ -1.72
FOXA3P55318 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC019072.1-201ENST00000604535 1551 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC018717.1-201ENST00000457712 1505 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
FOXA3P55318 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 AL157702.1-201ENST00000398764 426 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 EI24P3-201ENST00000399046 1062 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL353133.1-201ENST00000407695 401 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 HYALP1-201ENST00000417674 1279 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA3P55318 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA3P55318 PTPN2P1-201ENST00000423212 1072 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 RPL12P12-201ENST00000424633 501 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL645939.3-201ENST00000435408 225 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL592114.2-201ENST00000440142 532 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA3P55318 OR2L9P-201ENST00000444456 913 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 COX4I1P2-201ENST00000447446 547 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL079303.1-201ENST00000486611 463 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC137627.1-201ENST00000545761 289 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.32□□□□□ -1.72
FOXA3P55318 AP001823.1-201ENST00000604056 1003 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 STARD13-AS-224ENST00000608496 787 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 AL008582.1-201ENST00000609612 442 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AC010632.3-201ENST00000611377 369 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 MIR6732-201ENST00000619365 60 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 AL035661.1-201ENST00000620459 1144 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
FOXA3P55318 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.32□□□□□ -1.72
FOXA3P55318 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 HSPD1P7-201ENST00000447985 1686 ntBASIC4.32□□□□□ -1.72
FOXA3P55318 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.32□□□□□ -1.72
FOXA3P55318 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
FOXA3P55318 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 AL049869.1-201ENST00000556933 1402 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.31□□□□□ -1.72
FOXA3P55318 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
FOXA3P55318 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
FOXA3P55318 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 PKIB-203ENST00000368446 556 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 MIR1231-201ENST00000408101 92 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 AL121878.1-201ENST00000418638 859 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.31□□□□□ -1.72
FOXA3P55318 NDUFB4P8-201ENST00000435351 367 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 OR52U1P-201ENST00000439752 923 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 AC239800.1-201ENST00000442049 719 ntBASIC4.31□□□□□ -1.72
FOXA3P55318 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.31□□□□□ -1.72
FOXA3P55318 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.31□□□□□ -1.72
FOXA3P55318 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms