Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.62□□□□□ -1.19
HMGB1P09429 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.62□□□□□ -1.19
HMGB1P09429 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 RAD1P1-201ENST00000231383 813 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
HMGB1P09429 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
HMGB1P09429 SNORA7A-201ENST00000384765 139 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AL645939.3-201ENST00000435408 225 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 ELOCP10-201ENST00000440624 327 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 GAPDHP37-201ENST00000442317 968 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC006326.1-201ENST00000445465 787 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC7.62□□□□□ -1.19
HMGB1P09429 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC7.62□□□□□ -1.19
HMGB1P09429 RPL21P6-201ENST00000479171 504 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC7.62□□□□□ -1.19
HMGB1P09429 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 IGHVIII-11-1-201ENST00000522733 267 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AL121579.2-201ENST00000555466 590 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 LINC00557-201ENST00000563184 1279 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AC018845.1-201ENST00000564193 744 ntTSL 2 BASIC7.62□□□□□ -1.19
HMGB1P09429 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC027796.1-201ENST00000575593 512 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 ELOCP34-201ENST00000604436 327 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AL450270.1-201ENST00000606160 391 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC007342.8-201ENST00000623278 678 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 LINC02495-203ENST00000636704 242 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC7.62□□□□□ -1.19
HMGB1P09429 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC7.62□□□□□ -1.19
HMGB1P09429 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 OFD1P9Y-201ENST00000417699 1491 ntBASIC7.62□□□□□ -1.19
HMGB1P09429 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
HMGB1P09429 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC7.61□□□□□ -1.19
HMGB1P09429 AC010401.2-201ENST00000575137 4934 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.61□□□□□ -1.19
HMGB1P09429 AC092079.1-201ENST00000558620 1985 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 SNORD8-201ENST00000363915 110 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 SNORD94-201ENST00000386037 137 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 AP003170.5-201ENST00000397185 335 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 U3.43-201ENST00000410734 213 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.61□□□□□ -1.19
HMGB1P09429 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC7.61□□□□□ -1.19
HMGB1P09429 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC7.61□□□□□ -1.19
HMGB1P09429 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 AL513321.1-201ENST00000441175 761 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 AL445991.1-201ENST00000450381 475 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 RPL37AP8-201ENST00000494116 276 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 FTH1P8-201ENST00000498161 514 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC7.61□□□□□ -1.19
HMGB1P09429 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC7.61□□□□□ -1.19
HMGB1P09429 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
HMGB1P09429 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 AL512310.9-201ENST00000553311 948 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC7.61□□□□□ -1.19
HMGB1P09429 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC7.61□□□□□ -1.19
HMGB1P09429 AGGF1P7-201ENST00000562369 913 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC7.61□□□□□ -1.19
HMGB1P09429 CBX3P2-202ENST00000583365 535 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 AC010487.1-201ENST00000594408 1172 ntBASIC7.61□□□□□ -1.19
HMGB1P09429 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.61□□□□□ -1.19
HMGB1P09429 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
HMGB1P09429 TEX41-279ENST00000629149 609 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
HMGB1P09429 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC7.61□□□□□ -1.19
HMGB1P09429 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC7.6□□□□□ -1.19
HMGB1P09429 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
HMGB1P09429 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms