Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR323A-201ENST00000362199 86 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 TNPO1P1-201ENST00000423641 1138 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC7.52□□□□□ -1.21
COL3A1P02461 RNU1-88P-201ENST00000459274 128 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 RN7SL583P-201ENST00000475692 287 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AL136038.1-201ENST00000497246 351 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC021146.10-201ENST00000515628 706 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 RN7SKP248-201ENST00000516278 305 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC7.52□□□□□ -1.21
COL3A1P02461 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.52□□□□□ -1.21
COL3A1P02461 IGHVIII-67-4-201ENST00000524281 296 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC027026.1-201ENST00000532323 742 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC7.52□□□□□ -1.21
COL3A1P02461 MIR4489-201ENST00000578869 62 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AL109620.1-201ENST00000618738 1197 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC007683.2-201ENST00000624681 714 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC7.52□□□□□ -1.21
COL3A1P02461 AL049767.1-202ENST00000637826 242 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC7.52□□□□□ -1.21
COL3A1P02461 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.52□□□□□ -1.21
COL3A1P02461 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL3A1P02461 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.52□□□□□ -1.21
COL3A1P02461 ZNF969P-201ENST00000510345 2341 ntBASIC7.52□□□□□ -1.21
COL3A1P02461 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC7.52□□□□□ -1.21
COL3A1P02461 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC7.52□□□□□ -1.21
COL3A1P02461 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL3A1P02461 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.52□□□□□ -1.21
COL3A1P02461 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC7.51□□□□□ -1.21
COL3A1P02461 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 MIR143-201ENST00000385300 106 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 RPS20P25-201ENST00000412447 352 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 OR2AT2P-201ENST00000413438 905 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 RPL12P16-201ENST00000431098 498 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 BTG3P1-201ENST00000435859 716 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 LDHAP2-201ENST00000437325 985 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 DNAJC19P5-201ENST00000443295 316 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 RPS23P2-201ENST00000463671 415 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.51□□□□□ -1.21
COL3A1P02461 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC7.51□□□□□ -1.21
COL3A1P02461 AC007204.2-201ENST00000615022 616 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 AP004607.3-201ENST00000530354 3915 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 HNRNPA1P54-201ENST00000411857 9714 ntBASIC7.51□□□□□ -1.21
COL3A1P02461 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.51□□□□□ -1.21
COL3A1P02461 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL3A1P02461 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 RNU4-64P-201ENST00000410795 131 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 VN1R21P-201ENST00000426703 765 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 AL121776.1-201ENST00000429337 372 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 PDCL3P4-201ENST00000489621 720 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
COL3A1P02461 AC027308.1-201ENST00000517993 110 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 MRPS21P7-201ENST00000566937 238 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 AL513327.3-201ENST00000602618 469 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.5□□□□□ -1.21
COL3A1P02461 AL391262.2-201ENST00000622466 494 ntBASIC7.5□□□□□ -1.21
COL3A1P02461 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL3A1P02461 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL3A1P02461 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL3A1P02461 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL3A1P02461 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL3A1P02461 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
COL3A1P02461 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC7.5□□□□□ -1.21
COL3A1P02461 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.49□□□□□ -1.21
COL3A1P02461 OR3A2-201ENST00000408891 1076 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 RPSAP35-201ENST00000413753 818 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.49□□□□□ -1.21
COL3A1P02461 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 CRIP1P1-201ENST00000427567 185 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 YWHAEP1-201ENST00000453697 763 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 ATP5LP3-201ENST00000514223 304 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL3A1P02461 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC7.49□□□□□ -1.21
COL3A1P02461 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.49□□□□□ -1.21
COL3A1P02461 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC7.49□□□□□ -1.21
COL3A1P02461 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms